Research Article
Purifying Selection Bias against Microsatellites in Gene Rich Segmental Duplications in the Rice Genome
Table 2
Traceability of microsatellites originating from group I sequences into group II sequences.
| Motif | Region | Length (bp) in group I sequences | Traceability in group II sequences | Equal | Short | Long |
| Chromosome 1 corresponding chromosome 5 | | 9 | 2 | 2 | (CCG)n | Intergenic | 58 | √ | | | (CCG)n | Intergenic | 78 | | √ | | (CGG)n | Intergenic | 60 | | | √ | (CGG)n | Intergenic | 60 | | | √ | (GAAAA)n | Intergenic | 26 | √ | | | (GAAAA)n | Intergenic | 33 | | √ | | (TTTTC)n | Intergenic | 26 | √ | | | (TTTTC)n | Intergenic | 26 | √ | | | (TTTTC)n | Intergenic | 26 | √ | | | (TTTTC)n | Intron | 26 | √ | | | (TTTTC)n | Intron | 26 | √ | | | (TTTTC)n | Intergenic | 22 | √ | | | (TTTTC)n | Intergenic | 26 | √ | | |
| Chromosome 2 corresponding chromosome 4 | | 6 | 2 | 4 | (CCG)n | Intron | 174 | | √ | | (CGA)n | Intron | 150 | | | √ | (CGA)n | Intron | 150 | | | √ | (CGG)n | Intergenic | 58 | √ | | | (CGG)n | Intergenic | 58 | √ | | | (CGG)n | Intergenic | 211 | | | √ | (CGG)n | Intergenic | 126 | | | √ | (CGG)n | Intergenic | 211 | | √ | | (GAAAA)n | Intergenic | 28 | √ | | | (TTTTC)n | Intron | 22 | √ | | | (TTTTC)n | Intergenic | 28 | √ | | | (TTTTC)n | Intergenic | 27 | √ | | |
| Chromosome 2 corresponding chromosome 6 | | 2 | 1 | 2 | (CCG)n | Intron | 74 | | | √ | (CCG)n | Intergenic | 123 | | | √ | (CCG)n | Intergenic | 75 | | √ | | (TTTTC)n | Intron | 27 | √ | | | (TTTTC)n | Intergenic | 27 | √ | | |
| Chromosome 3 corresponding chromosomes 7, 10, and 12 | | 0 | 0 | 2 | (CGG)n | Intergenic | 59 | | | √ | (GAAAA)n | Intergenic | 22 | | | √ |
| Chromosome 4 corresponding chromosomes 8 and 10 | | 0 | 0 | 0 |
| Chromosome 8 corresponding chromosome 9 | | 1 | 2 | 1 | (CCG)n | Intergenic | 72 | | | √ | (CCG)n | Intergenic | 155 | | √ | | (CCG)n | Intergenic | 199 | | √ | | (TAA)n | Intergenic | 29 | √ | | |
| Chromosome 11 corresponding chromosome 12 | | 1 | 2 | 1 | (CCG)n | Exon | 76 | | | √ | (CCG)n | Exon | 154 | | √ | | (CGG)n | Intergenic | 147 | | √ | | (TCG)n | Exon | 70 | √ | | |
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