Predictive Models of Gene Regulation from High-Throughput Epigenomics Data

Table 1

Each of the four sets of transcript loci considered in our analysis. The numbers correspond to the loci before (all) or after (filtered) eliminating overlapping loci (Section 2). From each set, we considered up-, down-, or nonregulated transcript loci, each corresponding to 1/3 of the indicated numbers.

Transcript-loci set	Description	Pair 1-all	Pair 1-filtered	Pair 2-all	Pair 2-filtered
HCG IC	High CG promoter and intron-containing	6510	1959	2964	792
HCG IL	High CG promoter and intron-less	105	27	24	12
LCG IC	Low CG promoter and intron-containing	6705	1767	1980	585
LCG IL	Low CG promoter and intron-less	84	30	15	15