Comparative Analysis of SWIRM Domain-Containing Proteins in Plants

Table 1

SWIRM domain-containing proteins in plants.

	Swi3-type subfamily		LSD1-type subfamily		Ada2-type subfamily	Total
Arabidopsis thaliana	AtSWI3A; AtSWI3C	AtSWI3B; AtSWI3D	AtLSD1; AtLDL3	AtLDL2; AtFLD	AtADA2A; AtADA2B	10
Medicago truncatula		Mt4g069830 (SMARCC1); Mt5g085170 (SMARCC1); Mt3g088480 (SMARCC2); Mt3g099000 (SMARCC2); Mt3g116120 (SMARCC2); Mt8g095730 (SMARCC2)	MtLDL1; MtLDL2; MtLDL3		MtADA2A-1; MtADA2A-2; MtADA2B-1; MtADA2B-2	13
Oryza sativa L. ssp. Japonica	OsCHB701; OsCHB703; OsCHB705	OsCHB702; OsCHB704; OsCHB706	OsHDMA701; OsHDMA703	OsHDMA702; OsHDMA704	OsHXA701	11
Physcomitrella patens	PpCHB1501; PpCHB1503	PpCHB1502; PpCHB1504	PpHDMA1501; PpHDMA1503	PpHDMA1502; PpHDMA1504	PpHXA1502	9
Populus trichocarpa	PtCHB901; PtCHB903; PtCHB905	PtCHB902; PtCHB904	PtHDMA901; PtHDMA903; PtHDMA905	PtHDMA902; PtHDMA904; PtHDMA906	PtHXA901; PtHXA902; PtHXA903	14
Zea mays	ZmCHB101; ZmCHB103	ZmCHB102; ZmCHB104	ZmHDMA101; ZmHDMA103	ZmHDMA102; ZmHDMA104	ZmHXA102; ZmHXA103	10

Alias and other names referred to the SWIRM domain-containing proteinsin Arabidopsis thaliana and Medicago truncatula were assigned by http://www.arabidopsis.org/ and http://www.jcvi.org/cgi-bin/medicago/overview.cgi. The names of SWIRM domain-containing proteins in Oryza sativa, Physcomitrella patens, Populus trichocarpa, and Zea mays are assigned by chromatin database (http://www.chromdb.org).