Research Article
Mutator-Like Elements with Multiple Long Terminal Inverted Repeats in Plants
Table 1
Distribution of elements among tomato MULE TIR families.
| TIR family | Copy number | No. with TSD | percentage with TSD | Autonomous elements | percentage of Autonomous |
| SLMULE56 | 8 | 1 | 12.5 | 0 | 0.0 | SLMULE22 | 11 | 3 | 27.3 | 0 | 0.0 | SLMULE28 | 13 | 4 | 30.8 | 0 | 0.0 | SLMULE07 | 25 | 5 | 20.0 | 3 | 12.0 | SLMULE48 | 26 | 7 | 26.9 | 0 | 0.0 | SLMULE50 | 34 | 2 | 5.9 | 0 | 0.0 | SLMULE49 | 40 | 1 | 2.5 | 2 | 5.0 | SLMULE34 | 42 | 1 | 2.4 | 0 | 0.0 | SLMULE25 | 49 | 13 | 26.5 | 9 | 18.4 | SLMULE52 | 56 | 11 | 19.6 | 0 | 0.0 | SLMULE44 | 62 | 2 | 3.2 | 1 | 1.6 | SLMULE38 | 68 | 22 | 32.4 | 10 | 14.7 | SLMULE31 | 71 | 5 | 7.0 | 3 | 4.2 | SLMULE39 | 88 | 26 | 29.5 | 3 | 3.4 | SLMULE54 | 100 | 28 | 28.0 | 12 | 12.0 | SLMULE43 | 106 | 63 | 59.4 | 35 | 33.0 | SLMULE47 | 109 | 25 | 22.9 | 0 | 0.0 | SLMULE17 | 112 | 4 | 3.6 | 5 | 4.5 | SLMULE45 | 112 | 12 | 10.7 | 2 | 1.8 | SLMULE20 | 114 | 36 | 31.6 | 0 | 0.0 | SLMULE53 | 116 | 8 | 6.9 | 3 | 2.6 | SLMULE10 | 118 | 3 | 2.5 | 35 | 29.7 | SLMULE11 | 130 | 43 | 33.1 | 7 | 5.4 | SLMULE59 | 144 | 49 | 34.0 | 2 | 1.4 | SLMULE42 | 156 | 6 | 3.8 | 1 | 0.6 | SLMULE27 | 164 | 72 | 43.9 | 19 | 11.6 | SLMULE29 | 164 | 64 | 39.0 | 1 | 0.6 | SLMULE16 | 167 | 40 | 24.0 | 4 | 2.4 | SLMULE30 | 176 | 31 | 17.6 | 1 | 0.6 | SLMULE51 | 210 | 64 | 30.5 | 1 | 0.5 | SLMULE23 | 233 | 84 | 36.1 | 1 | 0.4 | SLMULE04 | 250 | 4 | 1.6 | 2 | 0.8 | SLMULE58 | 262 | 66 | 25.2 | 2 | 0.8 | SLMULE26* | 266 | 56 | 21.1 | 0 | 0.0 | SLMULE13 | 273 | 73 | 26.7 | 94 | 34.4 | SLMULE55 | 275 | 87 | 31.6 | 2 | 0.7 | SLMULE57* | 337 | 178 | 52.8 | 10 | 3.0 | SLMULE40 | 361 | 173 | 47.9 | 20 | 5.5 | SLMULE36 | 373 | 100 | 26.8 | 17 | 4.6 | SLMULE24* | 381 | 96 | 25.2 | 4 | 1.0 | SLMULE41 | 413 | 126 | 30.5 | 3 | 0.7 | SLMULE46* | 418 | 62 | 14.8 | 2 | 0.5 | SLMULE32 | 444 | 199 | 44.8 | 62 | 14.0 | SLMULE15 | 455 | 130 | 28.6 | 9 | 2.0 | SLMULE18* | 498 | 198 | 39.8 | 11 | 2.2 | SLMULE03 | 546 | 193 | 35.3 | 10 | 1.8 | SLMULE37* | 635 | 361 | 56.9 | 40 | 6.3 | SLMULE08* | 644 | 133 | 20.7 | 4 | 0.6 | SLMULE09* | 760 | 425 | 55.9 | 26 | 3.4 | SLMULE35 | 823 | 407 | 49.5 | 30 | 3.6 | SLMULE14 | 1144 | 236 | 20.6 | 1 | 0.1 | SLMULE21 | 1301 | 73 | 5.6 | 7 | 0.5 | SLMULE33* | 1310 | 548 | 41.8 | 16 | 1.2 | SLMULE05* | 1341 | 110 | 8.2 | 7 | 0.5 | SLMULE06 | 1621 | 816 | 50.3 | 18 | 1.1 | SLMULE02 | 1685 | 748 | 44.4 | 1 | 0.1 | SLMULE12 | 1798 | 748 | 41.6 | 5 | 0.3 | SLMULE19 | 2386 | 914 | 38.3 | 3 | 0.1 | SLMULE01 | 4017 | 2609 | 64.9 | 3 | 0.1 |
| Total | 28041 | 10604 | 38% | 569 | 2% |
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* MULE TIR families involved in TIR duplication.
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