Research Article
Identification and Characterization of MicroRNAs in Macaca fascicularis by EST Analysis
Table 1
Novel miRNAs identified in Macaca fascicularis.
| miRNA | Homolog miRNA | EST name | miRNA sequence (5′-3′) | Position | NM/nt | LM/nt | LP/nt | A + U(%) | MFE | MFEI |
| miR-122 | hsa | BB880656 | UGGAGUGUGACAAUGGUGUUUG | 176–155 | 0 | 22 | 56 | 62.50 | −24.2 | 1.15 | | gga | BB891562 | UGGAGUGUGACAAUGGUGUUUGU | 174–152 | 0 | 23 | 56 | 62.50 | −24.2 | 1.15 | | mdo | BB891562 | UGGAGUGUGACAAUGGUGUUUGUGU | 174–150 | 0 | 25 | 57 | 62.50 |
−24.2
| 1.13 | miR-122* | hsa | BB891562 | AACGCCAUUAUCACACUAAAUA | 138–117 | 0 | 22 | 60 | 63.33 | −25.3 | 1.10 | | mmu | BB891562 | AAACGCCAUUAUCACACUAA | 139–120 | 0 | 20 | 54 | 61.11 | −24.2 | 1.15 | miR-548aa | hsa | BB883545 | AAAAACCACAAUUACUUUUGCACCA | 592–568 | 0 | 25 | 67 | 64.18 | −29.9 | 1.20 | miR-548d-5p | hsa | BB883545 | AAAAGUAAUUGUGGUUUUUGCC | 574–595 | 1 | 22 | 55 | 70.91 | −25.1 | 1.57 | miR-548d-3p | mml | BB883545 | CAAAAACCACAAUUACUUUUGC | 593–572 | 1 | 22 | 57 | 68.42 | −27.2 | 1.51 | miR-675 | hsa | DC648667 | UGGUGCGGAGAGGGCCCACAGUG | 562–584 | 0 | 23 | 55 | 38.18 | −29.2 | 0.86 | miR-675* | hsa | DC648667 | CUGUAUGCCCUCACCGCUCA | 597–616 | 0 | 20 | 55 | 38.18 | −29.2 | 0.86 | miR-3591 | rno | BB891562 | AACACCAUUGUCACACUCCA | 155–174 | 0 | 20 | 57 | 62.50 | −23.6 | 1.12 |
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NM: nucleotide mismatch; LM: length of mature miRNA; LP: length of miRNA precursor; MFE: minimum free energy; MFEI: minimum free energy index.
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