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International Journal of Genomics
Volume 2013 (2013), Article ID 275616, 4 pages
http://dx.doi.org/10.1155/2013/275616
Research Article

Comparative Inference of Duplicated Genes Produced by Polyploidization in Soybean Genome

1College of Science, Hebei United University, Tangshan, Hebei 063009, China
2Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063009, China

Received 23 July 2013; Accepted 18 September 2013

Academic Editor: Guang Hu

Copyright © 2013 Yanmei Yang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. J. Schmutz, S. B. Cannon, J. Schlueter et al., “Genome sequence of the palaeopolyploid soybean,” Nature, vol. 463, no. 7278, pp. 178–183, 2010. View at Publisher · View at Google Scholar · View at Scopus
  2. A. H. Paterson, J. E. Bowers, and B. A. Chapman, “Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics,” Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 26, pp. 9903–9908, 2004. View at Publisher · View at Google Scholar · View at Scopus
  3. D. Grant, P. Cregan, and R. C. Shoemaker, “Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis,” Proceedings of the National Academy of Sciences of the United States of America, vol. 97, no. 8, pp. 4168–4173, 2000. View at Publisher · View at Google Scholar · View at Scopus
  4. J. F. Wendel, “Genome evolution in polyploids,” Plant Molecular Biology, vol. 42, no. 1, pp. 225–249, 2000. View at Publisher · View at Google Scholar · View at Scopus
  5. J. S. Taylor and J. Raes, “Duplication and divergence: the evolution of new genes and old ideas,” Annual Review of Genetics, vol. 38, pp. 615–643, 2004. View at Publisher · View at Google Scholar · View at Scopus
  6. S. De Bodt, S. Maere, and Y. Van De Peer, “Genome duplication and the origin of angiosperms,” Trends in Ecology and Evolution, vol. 20, no. 11, pp. 591–597, 2005. View at Publisher · View at Google Scholar · View at Scopus
  7. R. C. Shoemaker, K. Polzin, J. Labate et al., “Genome duplication in soybean (Glycine subgenus soja),” Genetics, vol. 144, no. 1, pp. 329–338, 1996. View at Scopus
  8. R. C. Shoemaker, J. Schlueter, and J. J. Doyle, “Paleopolyploidy and gene duplication in soybean and other legumes,” Current Opinion in Plant Biology, vol. 9, no. 2, pp. 104–109, 2006. View at Publisher · View at Google Scholar · View at Scopus
  9. Arabidopsis Genome Initiative, “Analysis of the genome sequence of the flowering plant Arabidopsis thaliana,” Nature, vol. 408, no. 6814, pp. 796–815, 2000.
  10. H. Tang, J. E. Bowers, X. Wang, R. Ming, M. Alam, and A. H. Paterson, “Synteny and collinearity in plant genomes,” Science, vol. 320, no. 5875, pp. 486–488, 2008. View at Publisher · View at Google Scholar · View at Scopus
  11. A. J. Gibbs and G. A. McIntyre, “The diagram, a method for comparing sequences. Its use with amino acid and nucleotide sequences,” European Journal of Biochemistry, vol. 16, no. 1, pp. 1–11, 1970. View at Scopus
  12. A. J. Gibbs and G. A. McIntyre, “The diagram, a method for comparing sequences. Its use with amino acid and nucleotide sequences,” European Journal of Biochemistry, vol. 16, pp. 1–11, 1970.
  13. M. Nei and T. Gojobori, “Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions,” Molecular Biology and Evolution, vol. 3, no. 5, pp. 418–426, 1986.
  14. D. S. Moore, The Basic Practice of Statistics, Macmillan Education Australia, 1995.