Identification of Pentatricopeptide Repeat Proteins in the Model Organism Dictyostelium discoideum

Table 3

Bioinformatic analysis of D. discoideum PPR protein homologs in other cellular slime moulds. The probability of helical repeats being PPR and the predicted number of motifs were determined using TPRpred.

Organism	NCBI protein accession number	PPR probability (%)	Number of PPR motifs
D. purpureum	XP_003289503	100	9
D. purpureum	XP_003288427	100	9
D. purpureum	XP_003290170	100	12
D. purpureum	XP_003284803	0	0
D. purpureum	XP_003288663	100	5
D. purpureum	XP_003294037	100	6
D. purpureum	XP_003284179	100	5
D. purpureum	XP_003286839	100	9
D. purpureum	XP_003285976	100	15
D. purpureum	XP_003291714	0.89	3
D. purpureum	XP_003293255	99.96	9
D. purpureum	XP_003286762	0	0
P. pallidum	EFA79424	100	9
P. pallidum	EFA76720	100	13
P. pallidum	EFA82229	100	3
P. pallidum	EFA79525	100	8
P. pallidum	EFA75260	100	5
D. fasciculatum	EGG14329	100	9
D. fasciculatum	EGG22645	100	12
D. fasciculatum	EGG13534	97.20	3
D. fasciculatum	EGG15096	100	8
D. fasciculatum	EGG14213	100	6