Research Article
Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
Table 7
A comparison of networkBLAST, NetworkBLAST-M, and HopeMap for yeast/fly/worm.
| Species | Specificity (%) in GO | Number of GO categories enriched ( value < 0.05) | Total conserved regions |
| NetworkBLAST | | | | S. cerevisiae | 100 | 14 | 59 | C. elegans | 88 | 13 | 59 | D. melanogaster | 94.9 | 16 | 59 | NetBLast-M restriceted | | | | S. cerevisiae | 100 | 29 | 64 | C. elegans | 68.8 | 32 | 64 | D. melanogaster | 98.4 | 37 | 64 | NetBLASt-M relaxed order | | | | S. cerevisiae | 94.6 | 45 | 92 | C. elegans | 67 | 29 | 92 | D. melanogaster | 90.1 | 41 | 92 | HopeMap-KO | | | | S. cerevisiae | 100 | 15 | 18 | C. elegans | 80 | 5 | 18 | D. melanogaster | 88.89 | 14 | 18 |
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