Research Article

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns

Table 7

A comparison of networkBLAST, NetworkBLAST-M, and HopeMap for yeast/fly/worm.

SpeciesSpecificity (%) in GONumber of GO categories enriched ( value < 0.05)Total conserved regions

NetworkBLAST
S. cerevisiae 1001459
C. elegans 881359
D. melanogaster 94.91659
NetBLast-M restriceted
S. cerevisiae 1002964
C. elegans 68.83264
D. melanogaster 98.43764
NetBLASt-M relaxed order
S. cerevisiae 94.64592
C. elegans 672992
D. melanogaster 90.14192
HopeMap-KO
S. cerevisiae 1001518
C. elegans 80518
D. melanogaster 88.891418