International Journal of Genomics

Research Article

Target Gene and Function Prediction of Differentially Expressed MicroRNAs in Lactating Mammary Glands of Dairy Goats

Table 2

Candidate target genes for differentially expressed miRNAs obtained by the intersection of at least three programs.
miRNA nameTarget geneTG1NS2
bta-miR-29bCOL3A1,  FBN1,  COL11A1,  COL1A2,  IREB2,  TRIB2,  MYCN,  BLMH,  PPM1D, DNMT3A,  ISL1,  PDGFB,  ARVCF,  ZBTB40 147
bta-miR-29cTRAF4,  PMP22,  COL4A2,  DNAJB11,  CRISPLD1,  PDGFB,  FBN1,  BLMH, ISL1,  YY1,  PPM1D,  IREB2,  FOS,  MYCN,  RLF,  HMCN1,  HMGN3,  DNMT3A,  SGK 196
bta-miR-375YBX1,  QKI,  ELAVL4,  ZFPM2,  HOXA3,  UBE3A,  PDE4D,  YAP1,  TSC22D2, TIMM8A,  EBF3,  PRKD1,  HABP2,  C13orf23 145
bta-miR-135aNR3C2,  CTTNBP2,  SP3,  VLDLR,  PTK2,  ARHGEF4,  ADCYAP1,  KCNMA1, BTBD10,  WAC,  NBEA,  INHBA,  TRPM7,  ELOVL6,  RAP2A,  USP15 166
bta-miR-22-5pBIN1,  WDR26,  SV2A,  SATB2,  BCL9,  MAT2A,  MAP3K12,  FNBP4,  FAM49B, BCL9L,  YARS,  RBM15,  WDFY3,  STAG2,  DNAJB5,  WDTC1,  SIRT1,  LRRC1 185
bta-miR-214ZBTB20,  ARPC5L,  KPNA3,  ARVCF,  RAB14,  WDTC1,  ITCH,  KLC2,  RTN2 96
bta-miR-33aABCA1,  KPNA4,  ZNF281,  SLC25A25,  YWHAH,  SATB2,  HADHB,  EEF1A1, CACNA1C,  CAMK2G,  ATP1B1 116
bta-miR-451TTN,  OSR1,  PMM2,  C11orf30,  AEBP2,  SAMD4B,  TBX1,  FBXO33,  CDKN2D, YWHAZ,  YTHDF2,  CAB39,  ZNF644 133
bta-miR-190aNEUROD1,  WSB1,  TNRC6A,  NBEA,  HECA,  C20orf112 66
bta-miR-378TOB2,  C11orf49,  SOX7,  DDAH1,  SULF1,  SRC,  DYRK1A,  DBT,  STAC2 93
bta-miR-423-5pSUFU,  NTN1,  STK24,  AP2A1,  DAB2IP,  MYBL2,  CAMTA2 73
bta-miR-7SPATA2,  ARID4A,  GLI3,  SNCA,  KCNJ2,  KLF4,  WDR47,  PDE4D,  PFN2,  GATA6, PHF21A,  LEMD3,  PPARGC1A 136
bta-miR-99aHOXA1,  MBNL1,  MTMR3,  HS3ST2,  SMAD7,  HNRPU 65
bta-miR-185ATP6V1F,  IKZF4,  SLC16A2,  CA10,  EPHB2,  PAK6,  DTX3,  NEUROD2,  CDC42, EIF2C1,  SF1,  PHYHIP,  CPEB2,  FAM53B,  PRX,  RAB14,  GATAD2B,  IGSF4C,  RAE1 195
bta-miR-1FNDC3A,  E2F5,  KTN1,  DDX5,  CLTC,  EIF4E 67
bta-miR-125aGTPBP2,  RAPGEFL1,  ABHD3,  ATP1B4,  PPP1CA,  ACCN2 65
bta-miR-382TOP1,  HSPA2,  EEF1A1,  RPE,   SYNCRIP,   CLTC 64
bta-miR-22-3pFAM49B,   SIRT1,  DNAJB5,  RBM15,  BCL9L,  STAG2,  LRRC1,  FNBP4,  SATB2, BCL9,  MAP3K12,  SV2A,  WDFY3 136
bta-miR-660DCBLD2,  SDC1,  DNAJA2 33
bta-miR-100HS3ST2,  FGFR3,  SMARCA5,  EIF2C2,  FZD8,  TRIB2,  SMAD7,  MTMR3,  HOXA1, HNRPU 105
bta-miR-146aIRAK1,  STRBP,  NOVA1,  KLF7,  LRRC15,  USP3,  STC1,  CASK,  SH3GL2,  ROBO1, PHOX2B,  PPP1R11,  RUNX1T1,  ZFYVE1,  BCL11A,  CNTFR,  MYT1,  ELAVL1,  SYT1,
NRP2,  HIC2,  EIF5A2,  FBXL10,  KCTD15,  DLGAP1,  SLC25A14,  SPIB 		274
bta-miR-184SF1,  SIDT2,  EIF2C2,  CREB3L1,  INPPL1,  RASL10B,  PRKCB1 74
Total of genes that are selected as candidate target genes.
2The number of programs that can predict these candidate target genes.