Research Article
The WRKY Transcription Factor Genes in Lotus japonicus
Table 3
Consensus sequences of WRKY motif in Lotus japonicus proteins.
| | Motif | Width | Consensus sequencesa |
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Motif1 | 29 | ILDDGYRWRKYGQKVIKGNPYPRSYYRCT | | Motif2 | 29 | PGCPVKKHVERSAEDPSMVITTYEGEHNH | | Motif3 | 21 | WRKYGQKVVKGSPFPRSYYKC | | Motif4 | 21 | RSLDGHVTEITYKGxHNCPKP | | Motif5 | 15 | VREPRVAVQTKSEVD | | Motif6 | 28 | LVEAMAAALTADPNFTAALAAAISSIIG | | Motif7 | 39 | EELERLNAENKKLREMLDQMNENYNALQMHLVELMQKQK | | Motif8 | 26 | PAAMAMASTTSAAASMLLSGSMPSAD | | Motif9 | 11 | HPNCPAKKKVE | | Motif10 | 113 | QNLQVQNFQNQNVQQAAPSFSTTPSFNAATPVPPISYRNAIIPLPFNVANPAPNTH
FNTSSFGSFLQGINGVDFVQSSRFMANNNQGLLRNNGLLQDMFVPAHMEFGGGGGRR | | Motif11 | 24 | CSASMATLSASAPFPTITLDLTQS | | Motif12 | 42 | DITEIISAPTSVTNSPILDLDLLDNVELDSNFPFNTPELFS | | Motif13 | 15 | KKRKMRVKRTVRVPA | | Motif14 | 91 | MPPPPPSPPLPPLSPLPLPPFHQQTSSFGSFKDLLTIEDFDPALFD
WNPTTTTNTAAAADVTSPPLFTTQISHPVPSPATSNILPEDSFDV | | Motif15 | 27 | SGGGELDDDEPDAKRWKGEGENDGYSA | | Motif16 | 15 | LLLNRTGHARFRRAP | | Motif17 | 26 | MEHLHKWEQKALINELIQGMELARKL | | Motif18 | 14 | MDDDWDLHAVVRGC | | Motif19 | 19 | MSVMPEFLQQGLNSSPVNV | | Motif20 | 39 | QCSGDIEGELTGEAMELGGEKAIESARALLSIGFEIKPC |
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Consensus amino acid sequence was derived from MEME program.
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