Research Article

Identification and Characterization of Microsatellites in Expressed Sequence Tags and Their Cross Transferability in Different Plants

Table 1

Details of 35 EST-SSR primer pairs sequences.

Serial numberTypePrimer pairs sequenceTa (°C)SSRPIC value valuePutative identities

EMS-1FCTCAGAGTTTGCTCACCCCTAC56(GAA)40.834 Chalcone-flavonone isomerase
EMS-1RTGCTGGGAAATGGTATGTGA
EMS-2FTTAGACTGTGACACTGCGAAGC52(CAA)40.91Chalcone synthase
EMS-2RACTTGGCCGAAAAACAACAC
EMS-3FCCACCCACTAAATCACTTGACA52(CCT)40.748Cinnamate 4-hydroxylase
EMS-3RGATCCTCCTCGCTCTCGAAT
EMS-4FAGCCACTGCACTTCTTGTTCTT52(GCC)70.2552Cinnamyl alcohol dehydrogenase
EMS-4RGGGATCTTCACCACAAACTTCT
EMS-5FCGTGGTGGAAAAGCTATTTAGG56(AAT)40.7268Flavonol synthase
EMS-5RAAACAAAACCACCCACTTCA
EMS-6FAATCATGGCCCTTTACCCTAGT52(CTTT)30.1516Endoxyloglucan transferase
EMS-6RCTTTGGCTTCCATTGTTCTTGT
EMS-7FGAAACTGAGGCACACAAAAA52(TTC)40.8979Endoxyloglucan transferase
EMS-7RTCATCAGCGTTCCATAGACTGT
EMS-8FGAAGAAACGCACTCTCTCTCTCTT58(CTCT)30.7207Oligosaccharyl transferase
EMS-8RATATGAAGGGACCATAGCCAGA
EMS-9FGTCGTTGCTTCTTTCTGCTTTT53(CTTT)30.7064Xyloglucan transferase
EMS-9RTAAGGGTGGGTAAATGGGATAC
EMS-10FCGTACGAGTTGAATCTCAGGA56(GAGA)40.6197Glutamine synthetase
EMS-10RCCAACAGGCCAGTTCACTTC
EMS-11FCCAACAACCACAAGAAACTGG56(CCAA)30.8481Isoflavone reductase
EMS-11RACGACCTCCGAACATTCAAC
EMS-12FCACATGCAACAGCACATCAAT56(CTT)60.9244Isopentenyl-diphosphate isomerase
EMS-12RCATCGACTGGTACATCTTCAGC
EMS-13FAGGGGAGAGGAAGGTGGAGT52(TGC)40.8996Isopentenyl-diphosphate delta isomerase
EMS-13RCAATTTCATGTTCTCCCCAGAT
EMS-14FAATCAGAAAATGGCACAGTCCT54(CTCT)30.6221Isopentenyl pyrophosphate
EMS-14RTCAGAAGGTGCCTTGTAAAGAA
EMS-15FGTTAAAGGTTCAGGAACGAACG54(CTT)40.777Isopentenyl pyrophosphate
EMS-15RGCAGATAGTCCAGTTCATGCTC
EMS-16FGTTAAAGGTTCAGGAACGAACG54(CTT)40.828Dimethyllallyl pyrophosphate isomerase
EMS-16RAACAGGTGTTTGTCCACACAAG
EMS-17FGTTAAAGGTTCAGGAACGAACG54(CTT)40.8344Dimethyllallyl pyrophosphate isomerase
EMS-17RCAACAATACCAAGCTCATCCAA
EMS-18FCACGAGGCTTTTTGAGAAAT54(CTAG)30.4159Isopentenyl transferase
EMS-18RCCCCATAAAAAGCAACAGTCAT
EMS-19FCAATAATTAATCCAGGCGGTTC52(TGGC)30.8307Enoyl-[acyl-carrier-protein]
EMS-19RCAAAGACATCGGTGATTCAGTG
EMS-20FGATCAAGGAATGCCGATCTTAC52(TTC)30.8333Phenylalanine ammonia-lyase
EMS-20RCGAGGTGCCATTTTATTTCC
EMS-21FAATCCTCCTCCTCCTTCCTC52(CGC)60.8425Farnesyltransferase alpha subunit
EMS-21RCGCTATGAGACCAAGCATGTAA
EMS-22FACGATTGTTTGATTGCCAAG52(GGAT)30.8892Alanine aminotransferase
EMS-22RTCCAAATGTTCCAGCACAAA
EMS-23FGCACCTTTTCAACCGTTCAC52(CTT)40.8966Alanine aminotransferase
EMS-23RGGCTTGCACCATCTGTCAT
EMS-24FCCTCTCTCTCCCTCTCTCCAA54(CAC)40.9127Isopropylmalate dehydratase
EMS-24RAAATATCCGAGGGTACGATTCC
EMS-25FCATTTTCCTTGCCTCTCTCTCT54(CGC)80.8831Chorismate mutase
EMS-25RCACTGAGCGCATGTCTTTTG
EMS-26FCGCTCTAGTTTCACATAAGCAGTC54(TCTT)30.7855Serine/threonine-protein kinase
EMS-26RGAATCATTTGCTTTTGGGTGTC
EMS-27FAGGAAGGAAGGAAGGAGAGGAG56(CCG)40.828Putative thiolase
EMS-27RCTGAGAAAACAGCTCAACTTGG
EMS-28FGCTTCCGTCTCCTTGGATAAC52(GTC)40.9231Acetyl-CoA acyltransferase
EMS-28RAACAGAACAAGCCCAGAACATT
EMS-29FCCAACTCCTCTCAACTTCTTGAT53(CGG)40.8525Putative alanine transaminase
EMS-29RGGGAAATGCCAGCAGAATAA
EMS-30FCAAAGGCGGATGAGTTCAAGT56(TGG)30.9252Flavonoid 3′-hydroxylase
EMS-30RCCATACGTTGACCAAGAGAGTG
EMS-31FTGTCTACTATCCAGCGAAACCA54(AAG)30.7549Cytochrome p450 monooxygenase
EMS-31RCAGCTAGTAAGATCGAGTTCAAACA
EMS-32FAAGCTATACGGCCCGATTTT52(AGA)30.861Cytochrome p450 monooxygenase
EMS-32RTTTGATGGAGAAAGGTTGGTCT
EMS-33FTTGAAATCTGGTCAAGAGGATG52(TA)80.5896Methylenetetrahydrofolate reductase
EMS-33RAAGGCTGCACTTTGTATTGTCC
EMS-34FTGGGACATGTGCTATTTGCTAC52(ACTG)30.8991Squalene synthase
EMS-34RGCAGGTGAGAGCCAAGATAAAT
EMS-35FACACAACAGGATCCTTCGAAAT54(AT)50.8722Putative tryptophan synthase alpha chain
EMS-35RAAGCGAGGCTGCCAAGAAC