Research Article
Comparative Genome Characterization of a Petroleum-Degrading Bacillus subtilis Strain DM2
Table 6
List of KO pathways for hydrocarbon and aromatic compound degradation.
| | KO | Genes | Enzymes | Protein ID |
| | K00121 | frmA, ADH, adhC | Alcohol dehydrogenase (EC: 1.1.1.1) | AXF33996 | | K00128 | ALDH | Aldehyde dehydrogenase family protein (EC: 1.2.1.3) | AXF35274, AXF35172 | | AXF35083, AXF33272 | | AXF32034, AXF31595 | | K00493 | CYP | Cytochrome P450 (EC: 1.14.14.1) | AXF32025 | | K00626 | atoB | Acetyl-CoA C-acetyltransferase (EC: 2.3.1.9) | AXF32322, AXF33714 | | K00074 | paaH | 3-Hydroxybutyryl-CoA dehydrogenase (EC: 1.1.1.157) | AXF33713 | | K01670 | nmsA | Naphthyl-2-methylsuccinate synthase alpha subunit (EC: 4.1.99.-) | AXF34000 | | K00632 | fadA/I | Acetyl-CoA acyltransferase (EC: 2.3.1.16) | AXF34569 | | K01821 | praC | 4-Oxalocrotonate tautomerase (EC: 5.3.2.6) | AXF35041 | | K01607 | pcaC | 4-Carboxymuconolactone decarboxylase (EC: 4.1.1.44) | AXF35133 | | K01113 | phoD | Alkaline phosphatase D (EC: 3.1.3.1) | AXF31608 | | K01077 | phoA | Alkaline phosphatase (EC: 3.1.3.1) | AXF31889 | | AXF32230 | | K01512 | acyP | Acylphosphatase (EC: 3.6.1.7) | AXF32061 | | K00517 | CYP81F | Cytochrome P450 (EC: 1.14.14.-) | AXF32565 | | K01034 | atoD | Acetate CoA/acetoacetate CoA-transferase alpha subunit (EC: 2.8.3.8) | AXF33316 | | K01101 | - | 4-Nitrophenyl phosphatase (EC: 3.1.3.41) | AXF34513 | | K00100 | bdhAB | Butanol dehydrogenase (EC: 1.1.1.-) | AXF34427 | | K00148 | fdhA | Glutathione-independent formaldehyde dehydrogenase (EC: 1.2.1.46) | AXF35308 | | K01428 | ureC | Urease subunit alpha (EC: 3.5.1.5) | AXF34944 | | K01429 | ureB | Urease subunit beta (EC: 3.5.1.5) | AXF34945 | | K01430 | ureA | Urease subunit gamma (EC: 3.5.1.5) | AXF34946 |
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