The Bacteriomes of Ileal Mucosa and Cecal Content of Broiler Chickens and Turkeys as Revealed by Metagenomic Analysis

Table 2

Summary of the 454 pyrosequencing data.

Sample	# of raw seqs assigned	# of sequences after screening	# of preclustered seqs after screening	Observed OTUs		Maximum # of OTUs			Good’s
				Mothur	USEARCH	Rarefaction	Chao1	ACE
CD-1	98021	91456	21080	3973	8899	6001	10657	19318	95.7%
CD-2	98238	91227	12437	2829	5162	4278	7806	14361	96.9%
CM-1	5457	2714	598	135	324	259	370	1121	95.0%
CM-2	5273	2506	330	114	199	205	287	580	95.5%
TD-1	56959	53527	10304	1891	4252	2779	5114	9286	96.5%
TD-2	57442	49836	6685	1484	2706	2188	3971	6948	97.0%
TM-1	8104	30	23	17	19	63	63	246	43.3%
TM-2	8683	33	19	15	16	19	18	21	54.5%

CD, chicken cecal digesta; CM, chicken ileal mucosa; TD, turkey cecal digesta; TM, turkey ileal mucosa.
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