Diverse Molecular Genotypes of Mycobacterium tuberculosis Complex Isolates Circulating in the Free State, South Africa

Table 1

Distribution of the various M. tuberculosis SITVIT and presumptive SPOTCLUST combined with the randomised initialising model of the TB-lineage/TB-lineage database families present in the three areas of the Free State province of South Africa.

FS district	⁢Number of isolates	Spoligotype family with number of isolates and the number of isolates with a SIT number, in brackets
		SPOTCLUST/RIM	LAM1	LAM3		LAM8	LAM9			T1					T2		T4	T5-RUS	S		X1	X3		Beijing	EAI1	Family 33			Family 36	H1
		TB-lineage	LAM1	LAM3	AFRI	LAM11-ZWE	LAM	LAM4	T5-RUS1	T	T2	T3	T5	T2-Uganda	X2	S	T5-RUS1	T5-RUS	S	H3-Ural-1	X1	X3	BOV_3	Beijing	CAS	EAI1_SOM	T3-OSA	Many1	T1-RUS2	H1
Lejweleputswa	22			6; (4)		1; (1)		1		4; (3)	1								1			3 (2)		3; (3)		1	1
Thabo Mofutsanyane	23		1	6; (4)			2; (2)			3; (2)		1	2 (1)	1		1		1; (1)	1			2 (2)	1		1
Mangaung	41			7; (5)	1	1; (1)	1; (1)		1	11; (6)					1		1; (1)		8 (6)	1	2 (1)			2; (2)				1	1	2 (1)
	86		1	19; (13)	1	2; (2)	3; (3)	1	1	18; (11)	1	1	2 (1)	1	1	1	1; (1)	1; (1)	10 (6)	1	2 (1)	5 (4)	1	5; (5)	1	1	1	1	1	2 (1)