Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes

Figure 4

Bacterial composition at phylum and genus levels; (a) cloacal relative abundance at phylum level; (b) oropharyngeal relative abundance at phylum level; (c) cloacal relative abundance at the genus level; and (d) oropharyngeal relative abundance at genus level for the different poultry species in all samples. A stacked column chart with taxonomic relative abundances (y-axis) by sample (x-axis). The height of each bar chart relates to the taxonomic relative abundances in a sample. For each poultry species and sample type, CN = chicken, DK = duck, GF = guinea fowl, GS = goose, PN = pigeon, and TY = turkey.

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