Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes

Figure 5

Taxonomic abundances heat map based on log-transformed relative abundance values; (a) heatmap representation of cloacal taxonomy abundance of the dominant genera; (b) heatmap representation of oropharyngeal taxonomy abundance of the dominant genera; (c) heatmap representation of cloacal taxonomy abundance of the detected species; and (d) heatmap representation of oropharyngeal taxonomy abundance of the detected species (y-axis) in all samples (x-axis). Color scale from red (high abundance) to blue (low abundance) represents log-transformed relative abundance. For each poultry species and sample type, CN = chicken, DK = duck, GF = guinea fowl, GS = goose, PN = pigeon, and TY = turkey.

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