Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes

Figure 8

Heatmap based on log-transformed relative abundance values showing the different abundances of predicted functions; (a) sample-wise KEGG pathway distribution plot and (b) COG pathway at different taxonomic levels between the two types of microbiomes across poultry species. Color scale from red (high abundance) to white (low abundance) represents log-transformed relative abundance. For each poultry species and sample type, CN = chicken, DK = duck, GF = guinea fowl, GS = goose, PN = pigeon, and TY = turkey.

(a)

(b)