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Linked References

1. M. R. Ahuja and D. B. Neale, “Evolution of genome size in conifers,” Silvae Genetica, vol. 54, no. 3, pp. 126–137, 2005.
2. D. Ware, P. Jaiswal, J. Ni, et al., “Gramene: a resource for comparative grass genomics,” Nucleic Acids Research, vol. 30, no. 1, pp. 103–105, 2002. View at Publisher · View at Google Scholar
3. J. M. Lee, G. F. Davenport, D. Marshall, et al., “GERMINATE. A generic database for integrating genotypic and phenotypic information for plant genetic resource collections,” Plant Physiology, vol. 139, no. 2, pp. 619–631, 2005. View at Publisher · View at Google Scholar · View at PubMed
4. D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler, “GenBank: update,” Nucleic Acids Research, vol. 32, database issue, pp. D23–D26, 2004. View at Publisher · View at Google Scholar · View at PubMed
5. L. D. Stein, C. Mungall, S. Shu, et al., “The generic genome browser: a building block for a model organism system database,” Genome Research, vol. 12, no. 10, pp. 1599–1610, 2002. View at Publisher · View at Google Scholar · View at PubMed
6. N. C. Putnam, “Searching MEDLINE free on the Internet using the National Library of Medicine's PubMed,” Clinical Excellence for Nurse Practitioners, vol. 2, no. 5, pp. 314–316, 1998.
7. B. Ewing, L. Hillier, M. C. Wendl, and P. Green, “Base-calling of automated sequencer traces using phred. I. Accuracy assessment,” Genome Research, vol. 8, no. 3, pp. 175–185, 1998.
8. X. Huang and A. Madan, “CAP3: a DNA sequence assembly program,” Genome Research, vol. 9, no. 9, pp. 868–877, 1999. View at Publisher · View at Google Scholar
9. M. Johnson, I. Zaretskaya, Y. Raytselis, Y. Merezhuk, S. McGinnis, and T. L. Madden, “NCBI BLAST: a better web interface,” Nucleic Acids Research, vol. 36, web server issue, pp. W5–W9, 2008. View at Publisher · View at Google Scholar · View at PubMed
10. M. Ashburner, C. A. Ball, J. A. Blake, et al., “Gene ontology: tool for the unification of biology. The Gene Ontology Consortium,” Nature Genetics, vol. 25, no. 1, pp. 25–29, 2000. View at Publisher · View at Google Scholar · View at PubMed
11. P. Jaiswal, S. Avraham, K. Ilic, et al., “Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages,” Comparative and Functional Genomics, vol. 6, no. 7-8, pp. 388–397, 2005. View at Publisher · View at Google Scholar · View at PubMed
12. J. Wixon and D. Kell, “The Kyoto encyclopedia of genes and genomes—KEGG,” Yeast, vol. 17, no. 1, pp. 48–55, 2000. View at Publisher · View at Google Scholar
13. S. Grisolia, “Enzyme nomenclature,” Science, vol. 133, no. 3465, pp. 1672–1674, 1961. View at Publisher · View at Google Scholar · View at PubMed
14. N. J. Mulder, R. Apweiler, T. K. Attwood, et al., “InterPro: an integrated documentation resource for protein families, domains and functional sites,” Briefings in Bioinformatics, vol. 3, no. 3, pp. 225–235, 2002. View at Publisher · View at Google Scholar
15. A. Marchler-Bauer, J. B. Anderson, P. F. Cherukuri, et al., “CDD: a Conserved Domain Database for protein classification,” Nucleic Acids Research, vol. 33, database issue, pp. D192–D196, 2005. View at Publisher · View at Google Scholar · View at PubMed
16. C. P. Ponting, J. Schultz, F. Milpetz, and P. Bork, “SMART: identification and annotation of domains from signalling and extracellular protein sequences,” Nucleic Acids Research, vol. 27, no. 1, pp. 229–232, 1999. View at Publisher · View at Google Scholar
17. A. Bateman, E. Birney, L. Cerruti, et al., “The Pfam protein families database,” Nucleic Acids Research, vol. 30, no. 1, pp. 276–280, 2002. View at Publisher · View at Google Scholar