|
| Databases | Website URL | Application |
|
| Barley Genetic Stocks | http://ace.untamo.net/cgi-bin/ace/searches/basic | Provides information on the
morphological & genetic background of barley mutants and contains
information on 736 barley translocation and duplication lines. |
| US Barley Germplasm | http://barleyworld.org/northamericanbarley/germplasm.php | Contains information on barley
recombinant chromosome substitution lines and North American barley mapping
populations. |
| EBDB | http://pgrc-35.ipk-gatersleben.de/portal/page/portal/PG_BICGH/P_BICGH/P_BICGH_RESOURCES/P_BICGHI_RESEBDB | The European Barley
Database (EBDB) contains passport and evaluation data of 155,000 barley
accessions including the international barley core collection. |
| ICARDA Barley varieties | http://www.icarda.cgiar.org/Crops_Varieties.htm#Barley | Provides an index of barley variety releases from ICARDA,
1977–2005. |
| Barley TILLING | http://www.scri.ac.uk/research/genetics/BarleyTILLING | A reverse genetics platform,
which can be screened for 8,600 barley (cultivar “Optic”) EMS mutagenized lines. |
| CR-EST | http://pgrc.ipk-gatersleben.de/cr-est/index.php | Barley EST database
containing sequences, functional annotation and clustering information of
more than 232,000 ESTs. |
| HarvEST | http://harvest.ucr.edu | Barley EST database
containing unigene sequences and the oligo design of Barley1 Affymetrix
array. It also includes a 1000 barley SNP loci genetic map showing syntenic
information with rice. |
| HvGI | http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=barley | This Hordeum vulgare Gene Index provides functional annotation
information, 70-mer oligo predictions and in silico gene expression data for
50,000 unigenes. |
| NCBI Barley genome view | http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=4513 | Provides an overview about the
available genomic and genomic survey sequences (GSS) of barley. |
| IBSC | http://barleygenome.org | Activities of the International
Barley Genome Sequencing Consortium (IBSC) are highlighted. |
| Barley genome | http://phymap.ucdavis.edu:8080/barley | Barley physical mapping
database and available BAC clones together with the accompaning ESTs. |
| Barley physical map | http://pgrc.ipk-gatersleben.de/kuenzel/barleymap.html | Barley translocation
breakpoints integrated into the Igri/Franka-derived RFLP linkage map. |
| Barley genomics | http://barleygenomics.wsu.edu | Contains information about barley
molecular markers, genetic maps, BACs and mutants. |
| Barley DB | http://ukcrop.net/perl/ace/search/BarleyDB | Contains information about barley
germ plasm, molecular markers, genetic maps and BACs. |
| Gramene | http://www.gramene.org | Provides an overview of
comparative maps of cereals including available updated molecular markers and
maps of barley. |
| GrainGenes | http://wheat.pw.usda.gov/GG2/index.shtml | Triticeae database provides an overview about available maps, genetic markers, QTLs and gene expression data. |
| Barley dbEST SSRs | http://www.genome.clemson.edu/projects/barley/ssr.dbest.html | 15,182 barley simple
sequence repeats (SSR) were predicted using the available 328,724 dbEST
dataset. |
| Barley SNP database | http://bioinf.scri.ac.uk/barley_snpdb | Barley SNP linkage map. |
| Barley RFLP database | http://pgrc.ipk-gatersleben.de/rflp/rflp.html | Contains data of mapped
barley RFLP-markers from IPK. |
| Barley DArT | http://www.triticarte.com/content/barley_diversity_analysis.html | High density consensus map
of barley DArT markers linking to existing SSR, RFLP and STS loci. |
| BarleyBase | http://www.plexdb.org/plex.php?database=Barley | An online dataset for
storing and visualizing gene expression data of the Barley 1
GeneChip Affymetrix array. |
| BDC-GED | http://pgrc.ipk-gatersleben.de/seeds | Contains barley developing
caryopses gene expression data. |
|
