Review Article
Progress in Understanding and Sequencing the Genome of Brassica rapa
Table 2
Genomic
resources for whole-genome sequencing of B.
rapa.
| | Genomic resources | Source material | Number |
| | Mapping populations | | | | DH line | Chiffu-401-42 Kenshin-402-43 | 78 lines (F2 generation) | | RI line | Chiffu-401-42 Kenshin-402-43 | 201 lines (F8 generation)
| | BAC libraries | | | | HindIII (KBrH) | Chiffu-401-42 | 56592 clones (115 kb(1)) | | BamHI (KBrB) | Chiffu-401-42 | 50688 clones (124 kb(1))
| | Sau3AI (KBrS) | Chiffu-401-42 | 55296 clones (100 kb(1)) | | cDNA libraries | | | | 22 cDNA libraries | Different tissues
of Chiffu-401-42 and Jangwon including leaves, roots, cotyledons, stems,
seedlings, ovules, siliques, anthers | — | | BAC-end sequences
| KBrH, KBrB, and
KBrS clones | 200017 sequences | | ESTs | 22 cDNA clones | 129928 sequences | | BAC shotgun
sequences | KBrH, KBrB, and
KBrS clones | on-going(2) |
|
|
(1)Average insert size (kb).
(2)Of BACs sequenced, 511 BACs have been deposited in GenBank.
|
