Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics

Table 1

Blast2GO performance figures of seven cDNA datasets. FE: percentage of sequences with some functional evidence (Mapping or InterProScan positive). BA: percentage of blast-based annotated sequences, #GO: number of GOs per sequence. GO L: mean GO level. IP: percentage of annotation increase by InterProScan. Ann: percentage of annotation increase by Annex. TA: total percentage of annotated sequences (including blast and InterPro). Datasets are described in [37].

DataSet	FE	BA	no. GOs	GO L	IP	Ann	TA
C. clementina	70.2	58.2	4.4	5.10	7.9	11.8	62.3
M. incog	70.7	55.7	5.6	4.95	11.8	9.9	63.9
T. harzianum	61.1	47.7	3.6	5.27	14.4	16.2	53.4
G. max	61.8	51.1	4.3	5.11	6.1	11.8	53.5
P. flesus	50.1	34.4	5.2	5.07	21.9	10.6	45.1
A. phagocytophilum	56.6	42.5	3.0	4.91	35.4	20.9	49.1
Whale metagenome	69.5	50.7	3.0	4.45	17.6	18	58.8