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International Journal of Plant Genomics
Table of Contents
Special Issues
International Journal of Plant Genomics
/
2008
/
Article
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Tab 3
/
Review Article
Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene
Table 3
Databases for transcription factors available on the internet.
Databse name
Description
URL
ACTIVITY
Functional DNA/RNA site activity
http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/
DoOP
Database of orthologous promoters: chordates and plants
http://doop.abc.hu/
EPD
Eukaryotic promoter database
http://www.epd.isb-sib.ch/
JASPAR
PSSMs for transcription factor DNA-binding sites
http://jaspar.cgb.ki.se/
MAPPER
Putative transcription factor binding sites in various genomes
http://bio.chip.org/mapper
TESS
Transcription element search system
http://www.cbil.upenn.edu/tess/
TRANSCompel
Composite regulatory elements affecting gene transcription in eukaryotes
http://www.gene-regulation.com/pub/databases.html#transcompel
TRED
Transcriptional regulatory element database
http://rulai.cshl.edu/tred/
TRRD
Transcription regulatory regions of eukaryotic genes
http://www.bionet.nsc.ru/trrd/
AthaMap
Genome-wide map of putative transcription factor binding sites in
Arabidopsis thaliana
http://www.athamap.de/
DATF
Database of
Arabidopsis
transcription factors
http://datf.cbi.pku.edu.cn/