Structural Characterization and Expression Analysis of the SERK/SERL Gene Family in Rice (Oryza sativa)
Table 1
OsSERK and OsSERL gene family in rice.
Name
Clone I
Accession numbe
Locus I
CDS length
Protein length
ORF length
Prime UTR
Prime UTR
Mol wt
No. of intron
Genomic Locu
Nearest mark
BAC/PAC
Chromosome
Accession
cM
name
number
number
position
OsSERL1
200981
AK111536
Loc_Os11g39370
2511
608
1827
215
470
67733.58
6.99
11
OSJNBb0030E22
11
AC120884
91.4
G4001
OsSERL 2
201844
AK066417
Loc_Os06g16330
2500
644
1935
169
397
69308.82
6.65
9
P0676F10
6
AP005813
54.1
S2539, C235, P138
OsSERL 3
210165
AK073972
Loc_Os02g49600
2639
324
975
113
1552
35295.7
8.07
8
OSJNBa0072H09
2
AP00575
129.4
C12691, C10187S
OsSERL 4
215260
AK120541
Loc_Os02g14120
2313
620
1863
160
291
67789.62
6.6
10
OJ1077_A12
2
AP003991
36.8–37.0
C2168, S10927S
OsSERL 5
210853
AK100017
Loc_Os1g07630
2421
628
1887
259
276
68913.90
6.59
10
P0583G08
1
AP003282
16.4
E222S
OsSERL 6
211096
AK100258
Loc_Os06g12120
2438
616
1851
425
163
67721.09
5.97
10
P0638H11/
6
AP003513
34.3
Y2587L
OsSERL 7
206718
AK111771
Loc_Os07g12320
2671
678
2037
126
509
72952.82
7.13
10
P0708B04
8
AP004764
80.7–82.8
S11114, E60162SB
OsSERL 8
208902
AK111846
Loc_Os03g49620
2507
543
1632
699
137
59976.31
5.73
11
OSJNBa0004L11
3
AC133334
122.8
R2847
OsSERL 9
201527
AK066118
Loc_Os02g18320
2968
607
1824
752
393
67658.71
5.44
10
OSJNBa0018M09
2
AP005533
50.3
C12706S, C626
OsSERK 1
213886
AK103038
Loc_Os08g07760
2674
624
1875
286
514
68701.34
6.21
10
OSJNBa0054L03
8
AP005164
34.6–35.7
E60560S, R2976
OsSERK 2
210613
AK099777
Loc_Os04g38480
2296
628
1887
203
207
68587.33
6.31
10
OSJNBa0036B21
4
AL606636
68.3
E3080S
ystematic designation given to rice SERK clone.ccession number of full-length cDNA sequence from KOME (http://cdna01.dna.affrc.go.jp/cDNA/).ocus ID of each OsSERK and OsSERL gene on rice chromosome psuedomolecules available at TIGR (release 4).ength of complete cDNA sequence in base pairs.ength (number of amino acids (aa)) of the deduced polypeptide.ength of open-reading frame in base pairs.ength of 5 prime and 3 prime UTR in base pairs. olecular weight (Daltons) and isoelectric point (pI) of the deduced polypeptides.umber of introns present within ORF.ame, chromosome number, accession number, and approximate cM position of the BAC/PAC clone in which SERK gene is present.earest marker to the SERK gene.
