Significance Test and Genome Selection in Bayesian Shrinkage Analysis
Figure 4
Empirical threshold values generated from “permutation within Markov chain” and the estimated QTL effects (simulated data) and empirical threshold values generated from “permutation within Markov chain” analysis at (2.5%–97.5%) and (5%–95%) along with the estimated QTL effects (simulated data). Percentiles for the 2.5%–97.5% interval are plotted against the genome location as dashed lines (wider interval). Percentiles of the 5%–95% interval are plotted against the genome location as solid lines (narrower interval). (a) Phenotype reshuffling in every 5 iterations (). (b) Phenotype reshuffling in every 10 iterations (). (c) Phenotype reshuffling in every 100 iterations ().
