Research Article
Chromosomal Location of HCA1 and HCA2, Hybrid Chlorosis Genes in Rice
Table 3
Primer sequences designed and used for mapping HCA1 and HCA2 loci.
| Marker name | Kind of DNA marker | | Primer sequences (5′–3′) |
Location on IRGSP pseudomolecules Build05 | | Chromosome | Position | Source | From | To |
| RM25969 | SSR | F | TAAATTTGGTTGTCTACGCATGG | 11 | 364229 | 364418 | [23] | R | CTGCTCCAGATTAGGAGCCAG | | | | redesigned in this study | | | | | | | | | E30794 | Indel | F | TCTGCCTATGTATTTGTGCGTTAAT | 11 | 679545 | 679744 | RGP | R | AAGTAACACAACGAAGGAGCAAC | | | | redesigned in this study | | | | | | | | | S1284 | Indel | F | ACATTCAACTGATCACAGCC | 11 | 2186184 | 2186392 | RGP | R | AGCTCTGCACTAGGATGATG | | | | | | | | | | | | | RM5599 | SSR | F | AATTTTGTGCTGTTGTTGAA | 11 | 3810354 | 3810494 | [28] | R | CTCACAATATCACCATCCAC | | | | | | | | | | | | | S21074 | Indel | F | TGCTATAGGTGGTGGTATGC | 11 | 5588871 | 5589049 | RGP | R | TTTCAAGCTGACGAACGATG | | | | | | | | | | | | | RM202 | SSR | F | CCAGCAAGCATGTCAATGTA | 11 | 9050541 | 9050718 | [29] | R | CAGATTGGAGATGAAGTCCTCC | | | | | | | | | | | | | RM5731 | SSR | F | CCTCCACCCTAAGCTTCTCC | 11 | 10005222 | 10005423 | [28] | R | CGATGCACCTAGCGCATC | | | | | | | | | | | | | RM27404 | SSR | F | GCAGCGATTGGAGGTGGAA | 12 | 204766 | 204863 | [23] | R | GACCGTGCCATCTTGTCCAG | | | | redesigned in this study | | | | | | | | | RM27421 | SSR | F | TCAACTCCATTCTACTCTCTACCC | 12 | 468463 | 468538 | [23] | R | GCTGCTGGTACTTCGTAGAGG | | | | | | | | | | | | | KGS1739 | Indel | F | AGAGACGCAGGAGCTGCTTA | 12 | 1999528 | 1999818 | [14, 30] | R | CATGACCCTTCTATGGCAATTAT | | | | | | | | | | | | | RM6296 | SSR | F | CCCACGTTTCTCTTGTCCTC | 12 | 3200580 | 3200734 | [28] | R | TCTTGCCTCGCTAGGGTTAG | | | | | | | | | | | | | RM27695 | SSR | F | CTATAAAGAGTCCGAGGGGTATTGT | 12 | 4828865 | 4829000 | [23] | R | GGGAGAGGATGTGAATGAAGG | | | | redesigned in this study | | | | | | | | | RZ869 | Indel | F | TTTTGGTATTTGCTGCATGG | 12 | 7739507 | 7739753 | RGP | R | TATCAATCACCCCCAACCTC | | | |
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