Table 2: List of some plant species used in this study, their taxonomy (according to NCBI Taxonomy: http://www.ncbi.nlm.nih.gov/taxonomy) and the results of in silico mining of chromodomains by LTR retrotransposon clades. The full list is available in Supporting Information Table in Supplementary Material available online at doi: 10.1155/2012/874743.

ClassOrderFamilySpeciesESTGSS/WGS

ChlamyvirOtherChlamyvirother

BangiophyceaeBangialesBangiaceaePorphyra yezoensisNANA

CyanidialesCyanidiaceaeGaldieria sulphurariaNANA

TrebouxiophyceaeChlorellalesChlorellaceaeChlorella vulgaris7

ChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas reinhardtii133

VolvocaceaeVolvox carteri f. nagariensis324120

ReinaTekayGaladrielReinaTekayGaladriel

LycopodiopsidaLycopodialesLycopodiaceaeHuperzia serrataNANANA

PolypodiopsidaPolypodialesPteridaceaeAdiantum capillus-veneris1NANANA

ConiferopsidaConiferalesPinaceaePicea glauca 62

Pinus taeda45182

Pinus banksiana93

MonocotyledonsPoalesPoaceaeTriticum aestivum 3751091

Brachypodium distachyon1146371

Oryza sativa Indica Group5164239

Oryza sativa Japonica Group5562378

Sorghum bicolor1418>1000

Zea mays53105600 >10000

EudicotyledonsSolanalesSolanaceaeSolanum lycopersicum1117>100080

Solanum tuberosum28111>100012

Nicotiana tabacum233921852973297

LamialesPhrymaceaeMimulus guttatus211637013

BrassicalesBrassicaceaeArabidopsis thaliana261423

Brassica napus235992

SapindalesRutaceaeCitrus clementina111835

FabalesFabaceaeGlycine max1222252

Lotus japonicus23862

VitalesVitaceaeVitis vinifera441859327

NA: no data available.