International Journal of Reconfigurable Computing

Research Article

A Protein Sequence Analysis Hardware Accelerator Based on Divergences

Table 2

Score matrices and vectors of the Viterbi algorithm for the comparison of the sequence ACYDE against the profile HMM of Figure 2.
NBMIDEJC
012340123401234
—00
A−1−1 −5−4−4−4 1−1−32 2
C−2−2 −413−1−3 1−8−8−8 −89710 10
Y−3−3 −5−3117 1122−4 −9−778 9
D−4−4 −6−31713 −11086 −10−71314 14
E−5−5 −5−3925 −291524 −9−7525 25