High Performance Biological Pairwise Sequence Alignment: FPGA versus GPU versus Cell BE versus GPP

<table>The parallel code flow of Smith-Waterman algorithm on Cell BE. The PPE transmits data to SPEs via one message queue and receives the results from SPEs by another.</table>

International Journal of Reconfigurable Computing

fig11

Figure 11

Figure 11: High Performance Biological Pairwise Sequence Alignment: FPGA versus GPU versus Cell BE versus GPP 