Research Article
Cell Polarity, Epithelial-Mesenchymal Transition, and Cell-Fate Decision Gene Expression in Ductal Carcinoma In Situ
Table 1
Differentially expressed genes between ADH or DCIS and histologically normal (HN) tissue (ordered according to
value).
| ADH versus HN | DCIS versus HN | Gene symbol | value | Variation | Gene symbol | value | Variation |
| JAM3 | 0.000045 | ↓ | JAM3 | 0.000016 | ↓ | JAG2 | 0.000337 | ↓ | EGFR | 0.000103 | ↓ | CD24 | 0.000364 | ↑ | SNAI2 | 0.000127 | ↓ | SNAI2 | 0.000594 | ↓ | CLDN5 | 0.000136 | ↓ | EGFR | 0.001897 | ↓ | JAM2 | 0.000150 | ↓ | FOXC1 | 0.002222 | ↓ | FOXC1 | 0.000167 | ↓ | EGF | 0.003163 | ↓ | CD24 | 0.000277 | ↑ | ID2 | 0.003547 | ↑ | JAG2 | 0.000297 | ↓ | JAM2 | 0.005052 | ↓ | KRT5 | 0.000420 | ↓ | TJP3 | 0.005070 | ↑ | KRT14 | 0.000425 | ↓ | TGFBR3 | 0.005537 | ↓ | GATA3 | 0.000490 | ↑ | KRT17 | 0.005624 | ↓ | TGFBR3 | 0.000710 | ↓ | GATA3 | 0.005795 | ↑ | TJP3 | 0.001046 | ↑ | TP53 | 0.006737 | ↑ | KRT17 | 0.001402 | ↓ | CDH4 | 0.006916 | ↓ | SOX4 | 0.001942 | ↑ | AKT1 | 0.009044 | ↑ | AKT1 | 0.002867 | ↑ | CLDN7 | 0.012026 | ↑ | CLDN8 | 0.003090 | ↓ | EPCAM | 0.015207 | ↑ | CDC42 | 0.003643 | ↑ | ABCG2 | 0.019210 | ↓ | EGF | 0.003752 | ↓ | KRT5 | 0.019854 | ↓ | EPCAM | 0.004605 | ↑ | KRT14 | 0.020117 | ↓ | CLDN7 | 0.004749 | ↑ | CLDN11 | 0.023005 | ↓ | ESR1 | 0.007188 | ↑ | PARD3 | 0.030202 | ↓ | DLG1 | 0.007249 | ↑ | SOX4 | 0.036127 | ↑ | KRT19 | 0.007637 | ↑ | CDC42 | 0.036404 | ↑ | FOXA1 | 0.007844 | ↑ | TIAM1 | 0.038034 | ↑ | KRT18 | 0.010091 | ↑ | ESR1 | 0.038527 | ↑ | CDH3 | 0.010638 | ↓ | PVR | 0.039104 | ↓ | TIAM1 | 0.010722 | ↑ | | | | TGFBR2 | 0.013243 | ↓ | | | | RHOA | 0.013540 | ↑ | | | | BRCA1 | 0.014098 | ↑ | | | | ID4 | 0.017030 | ↓ | | | | ID2 | 0.018115 | ↑ | | | | NOTCH4 | 0.018550 | ↓ | | | | PVRL2 | 0.019914 | ↑ | | | | AKT3 | 0.020275 | ↓ | | | | ACTN1 | 0.020619 | ↓ | | | | PROM1 | 0.022238 | ↓ | | | | CDH4 | 0.022933 | ↓ | | | | DLG3 | 0.023798 | ↑ | | | | F11R | 0.031657 | ↑ | | | | CTNNA1 | 0.033234 | ↑ | | | | MTA2 | 0.033999 | ↓ | | | | ABCG2 | 0.037966 | ↓ | | | | MPP5 | 0.039023 | ↑ | | | | HIF1A | 0.039489 | ↑ | | | | CDKN1A | 0.047769 | ↑ |
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In bold, genes with an estimated FDR < 0.01.
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