Molecular Profiles of Pre- and Postoperative Breast Cancer Tumours Reveal Differentially Expressed Genes

Table 2

TaqMan assays used for validation qRT-PCR and correlation between the microarray and the qRT-PCR results. The 𝑃 values given are for positive correlation. 𝑟: Pearson's product-moment correlation.

Gene	Array probe ID	TaqMan assay ID	Task	𝑟	𝑃
18S	NA	Hs99999901_s1	Endogenous control	NA	NA
ACTB	A_23_P31323; A_24_P226554; A_24_P226554; A_32_P137939	Hs99999903_m1	Endogenous control	0.904	1.7𝐸−4
ANGEL2	A_24_P28622	Hs00404357_m1	Target	0.238	0.254
CYP2D6	A_23_P143734; A_23_P155123	Hs02576167_m1	Target	0.262	0.232
CYR61	A_23_P46426; A_24_P370946	Hs00155479_m1	Target	0.894	2.4𝐸−4
DUSP1	A_23_P110712	Hs00610256_g1	Target	0.983	1.7𝐸−7
DUSP9	A_24_P417189	Hs00154830_m1	Target	−0.630	0.965
EVI2B	A_23_P66694	Hs00272421_s1	Target	0.945	1.8𝐸−5
FOSB	A_23_P429998	Hs00171851_m1	Target	0.749	0.006
GAPDH	A_23_P13899	Hs99999905_m1	Endogenous control	0.632	0.025
MALAT1	A_24_P497244	Hs00273907_s1	Target	0.332	0.174
MAPK3	A_23_P37910	Hs00385075_m1	Target	−0.018	0.520
NFRκB	A_23_P24485	Hs00196269_m1	Target	−0.169	0.680
PTPRE	A_24_P213494; A_24_P213503	Hs00369944_m1	Target	0.413	0.118
RASD1	A_24_P348006; A_23_P118392	Hs02568415_s1	Target	0.797	0.003
TMEM19	A_24_P358976	Hs00217586_m1	Target	0.248	0.245