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Volume 2012 (2012), Article ID 815016, 7 pages
Models for Population Growth Curves
12528 West Klamath, Kennewick, WA 99336, USA
2National Marine Mammal Laboratory, Alaska Fisheries Science Center, NOAA Fisheries Service, 7600 Sand Point Way NE, Seattle, WA 98115, USA
Received 18 October 2011; Accepted 20 November 2011
Academic Editor: G. Wang
Copyright © 2012 L. L. Eberhardt and J. M. Breiwick. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
We examined models for population growth curves, contrasting integrated versions with various other forms. A sizable number of data sets for birds and mammals were considered, but the main comparisons were based on 27 data sets that could be fit to the generalized logistic curve. Akaike's information criterion was used to rank fits of those data sets to 5 integrated models. We found that the integrated models gave the best fits to the data examined. The difference equations examined gave much poorer fits as judged by AICc and coefficients of variation. We conclude that the integrated models should be used when possible.
Most recent use of population growth curves has focused on difference equation models (also called “finite population models”). Such models may give a somewhat wider scope for applications and for theory, than do the integrated versions of these models. However, the available integrated versions appear to give much better fits to actual growth curve data, raising some questions about the practical utility of the difference equation versions. We thus examine a number of integrated and difference equation models in this paper. The data used are for birds and mammals. Rather different results may apply for insects and some species of fish.
The first of the integrated models used here, the generalized logistic reported by Nelder  and by Pella and Tomlinson , but best known from Ayala et al. , and often termed the theta-logistic is: The corresponding difference equation is A rearrangement of (2) is designated here as the “Sibly model” [19–22]: The Gompertz curve is The difference equation in the form used by Dennis et al.  is The logistic growth curve is obtained by setting in (1): The difference equation is The exponential model is The difference equation is The equation of Morris and Doak  is with variance estimate: In the notation used here . A modification of (1), with , is considered here, as it has significant advantages. It is here denoted as a modified logistic: In the aforementioned models, is the asymptotic value, is a rate of increase, is the parameter controlling the inflection point in a growth curve, represents initial population size, and and are functions of and in the Gompertz equations. The models have been fit by using nonlinear least-squares, , as implemented in the R-language .
2.2. Akaike’s Information Criterion
AIC is calculated as  the are deviations (residuals) from the model fit (assumed to be normally distributed), is sample size, and is the number of parameters in the model plus 1. Most of the available data sets have small samples, so Burnham and Anderson  recommended using Model comparisons are made using where is the minimum value calculated for a set of models.
2.3. Data Sources
Part of the data used here was obtained in 2006 from the Global Population Dynamics Database (GPDD) maintained by the National Environmental Research Council at http://www.sw.ic.ac.uk/cpb/gpdd.html. ID numbers for data used from the GPDD appear in the tables. Data sets from the GPDD were obtained by searching the entire data set (over 4000 entries) by inspecting plots of each data set and attempting to fit curves. An up-to-date version of the GPDD data was obtained in 2008 and searched for additional examples. Over 100 data sets were examined in detail, but those that could be fit to (1) are the primary data sets used here.
3.1. Integrated Models versus Difference Equations
Table 1 contrasts the generalized logistic (1) with the corresponding difference equation (2), and the ordinary logistic (6) with its corresponding difference equation (7), using residual mean squares in consequence of the experience of Eberhardt et al. , who found that residual mean squares performed better on data similar to those used here. We believe that the “adjustment factor” of Burnham and Anderson  (in (14)) may discriminate against models with the larger number of parameters. In nearly all instances, the integrated version is to be preferred, as shown by residual mean squares. The two apparent exceptions in Table 1 have highly variable data.
Table 2 makes the same contrast for the Gompertz equation (4) with the corresponding difference equation (5). Smaller samples are available due to the fact that the Gompertz did not fit a number of the data sets. That the “Sibly” model gives even more variable results is illustrated in Table 3, where the Sibly model (3) has a larger coefficient of variation in all cases where a comparison could be made, with the exception of the Seneca deer data which has essentially an exponential trend.
In those cases marked by an asterisk in Table 3, the estimates of the asymptotic value () are nearly the same for the difference equation (2), the Sibly model (3), and the generalized logistic (1). In all of these cases, the data reach an asymptotic value or closely approximate an asymptote. Coefficients of variation (standard error/K) show that the “Sibly” model (3) gives much more variable estimates than do the other two models considered. These are cases where no gaps existed in the count data. The “Sibly” model does not accommodate isolated data points and has to be fit in segments (yielding more variable estimates), whereas the integrated models can be applied directly in such cases.
Table 4 gives estimates of the coefficient () governing the inflection point in the generalized logistic model, suggesting use of 2.0 in the modified logistic (12). Table 5 contrasts the 5 integrated models using AI, showing that the modified logistic is generally superior. Clark et al.  found, using simulations, that there appeared to be a linear relationship between and in the generalized logistic model. Using our data set on birds and mammals, we found a correlation between and (−0.51) and a distinctly nonlinear relationship. The data appear in Figure 1.
Table 6 compares the Morris and Doak  ((10) and (11)) with exponential models fitted by nonlinear least-squares or a linear fit with log-transformation. The median values indicate that all 3 methods give much the same values, but the Morris and Doak approach is far more variable, as indicated by coefficients of variation. The coefficients of variation show essentially no difference between the two approaches using exponential models. It should be noted that the Morris and Doak estimator (10) can be used with virtually any data set giving nonsensical results in some cases (only exponential-type data were used in Table 6). Thus Morris and Doak  used 39 observations on the Yellowstone grizzly bear data, as shown in their Figure 3.6 and Table 3.1. The problem is that the population was initially decreasing and then, as protective measures began to take effect, started to increase in the early 1980s and continued to do so for the remainder of the series. Consequently, the resulting estimate of (or μ) is of no practical value. Eberhardt and Breiwick  give details and cite 7 published papers that largely ignore the change in trend and thus give largely meaningless results.
3.2. Scope of Models
Clark et al.  extracted 99 data sets from the 1198 published by Brook and Bradshaw  using a set of criteria that included a minimum number (19) of “transitions” (used because they used difference equations), so all of the data they used had at least 20 observations. This data set contained 42 cases involving birds and mammals, which we screened with linear regression, of which 20 could be fit with the modified logistic (12) or with an exponential model (4 cases). Those that did not have significant slopes were examined with (10) and appeared to be essentially stationary series (correlation = 0) with the exception of a few instances (3) with an erratic pattern. There were just 4 cases in the Clark data that also fell in our sample (Fulmar 6527, Blue Wildebeest 7060, Sandhill crane 9990, and Blue tit 6830).
The results given here indicate that, for any practical purposes, the integrated models should be used for species like those considered here (birds and mammals). The Gompertz model may be preferred for some species of fish and for insects. Our analyses here have largely been restricted to data sets that can be fit by the generalized logistic (1). The modified logistic (12) and the ordinary logistic (6) can be fit to a much wider range of data. In a few cases, the exponential (8) may appear to give a better fit, but these appear to be largely instances where the data are limited to the early stages of population increase.
The recent ecological literature contains a wide range of difference equations (finite population growth models). We have studied 5 of these , but there are additional examples [20–23, 30–35]. One reason for the popularity of difference equation models is that they provide a wide range of models, some of which have no integrated analogs. A popular example is the Ricker model [36, 37]: where is the rate of increase and K the asymptotic value, as before. This model was originally developed for cases where is quite large and thus may be useful for such situations. If is not large (as in all of the cases examined here), the model reduces to the difference equation version of the ordinary logistic, so that the ordinary logistic or (preferably the modified logistic) can be used. There may thus be some practical reasons to consider difference equations. In many other cases, it appears that the principal goals are the development of ecological theory.
- W. N. Bonner, “Population increase of grey seals at the Farne Islands. Biology of the Seal,” in Rapports et Proces-Verbaux des Reunions, Conseil International pour l’Exploration de la Mer, K. Ronald and A. W. Mansfield, Eds., vol. 169, pp. 366–370, 1975.
- R. A. Fredin, “Levels of maximum net productivity in populations of large terrestrial mammals,” in Reproduction in Whales, Dolphins and Porpoises, W. F. Perrin, R. L. Brownell Jr., and D. P. DeMaster, Eds., Special Issue 6, pp. 381–387, Reports of the International Whaling Commission, Cambridge, UK, 1984.
- B. S. Stewart, P. K. Yochem, H. R. Huber, et al., “History and present status of the northern elephant seal population,” in Elephant Seals: Population Ecology, Behavior, and Physiology, B. J. Le Bouef and R. M. Laws, Eds., pp. 29–48, University of California Press, Berkeley, Calif, USA, 1994.
- W. T. Hesselton, C. W. Sevringhaus, and J. E. Tanck, “Population dynamics of deer in the Seneca army depot,” New York Fish and Game Journal, vol. 12, pp. 17–30, 1965.
- S. Grange, P. Duncan, and J. M. Gaillard, “Poor horse traders: large mammals trade survival for reproduction during the process of feralization,” Proceedings of the Royal Society B: Biological Sciences, vol. 276, no. 1663, pp. 1911–1919, 2009.
- A. L. Scorolli and A. C. L. Cazorla, “Demography of feral horses (Equus caballus): a long-term study in Tornquist Park, Argentina,” Wildlife Research, vol. 37, no. 3, pp. 207–214, 2010.
- L. Tatin, S. R. B. King, B. Munkhtuya, A. J. M. Hewison, and C. Feh, “Demography of a socially natural herd of Przewalski's horses: an example of a small, closed population,” Journal of Zoology, vol. 277, no. 2, pp. 134–140, 2009.
- P. E. Davis and J. Newton, “Population and breeding of red kites in Wales over a 30 year period,” Journal of Animal Ecology, vol. 50, pp. 759–772, 1981.
- K. W. Kenyon, V. B. Scheffer, and D. G. Chapman, “A population study of the Alaska fur seal herd,” Special Scientific Report wildlife no. 12, United States Department of the Interior, U. S. Fish and Wildlife Service, Washington, DC, USA, 1954.
- L. L. Eberhardt and T. J. O'Shea, “Integrating manatee life history data and population model development. Population biology of the Florida manatee,” in Information and Technology Report 1, T. J. O'Shea, B. B. Ackerman, and H. F. Percival, Eds., Technical Report Series, pp. 269–278, National Biological Service, Ft. Collins, Colo, USA, 1995.
- L. L. Eberhardt and J. M. Breiwick, “Trend of the Yellowstone grizzly bear population,” International Journal of Ecology, vol. 2010, Article ID 924197, 5 pages, 2010.
- D. L. Spencer and C. J. Lensink, “The muskox of Nunivak Island, Alaska,” Journal of Wildlife Management, vol. 34, pp. 1–15, 1970.
- J. P. Croxall, P. Rothery, S. P. C. Pickering, and P. A. Prince, “Reproductive performance, recruitment and survival of wandering albatrosses Diomedea exulans at Bird Island, South Georgia,” Journal of Animal Ecology, vol. 59, no. 2, pp. 775–796, 1990.
- K. J. Gaston, “Valuing common species,” Science, vol. 327, no. 5962, pp. 154–155, 2010.
- J. A. Fuller, R. A. Garrott, and P. J. White, “Emigration and density dependence in Yellowstone bison,” Journal of Wildlife Management, vol. 71, no. 6, pp. 1924–1933, 2007.
- J. A. Nelder, “The fitting of a generalization of the logistic curve,” Biometrics, vol. 17, pp. 89–110, 1961.
- J. J. Pella and P. K. Tomlinson, “A generalized stock production model,” Bulletin of the Inter-American Tropical Tuna Commission, vol. 13, pp. 419–496, 1969.
- F. J. Ayala, M. E. Gilpin, and J. G. Ehrenfeld, “Competition between species: theoretical models and experimental tests,” Theoretical Population Biology, vol. 4, no. 3, pp. 331–356, 1973.
- R. M. Sibly, D. Barker, M. C. Denham, J. Hone, and M. Pagel, “Ecology: on the regulation of populations of mammals, birds, fish, and insects,” Science, vol. 309, no. 5734, pp. 607–610, 2005.
- B. W. Brook and C. J. A. Bradshaw, “Strength of evidence for density dependence in abundance time series of 1198 species,” Ecology, vol. 87, no. 6, pp. 1445–1451, 2006.
- B. E. Sæther, V. Grøtan, P. Tryjanowski, C. Barbraud, S. Engen, and M. Fulin, “Climate and spatio-temporal variation in the population dynamics of a long distance migrant, the white stork,” Journal of Animal Ecology, vol. 75, no. 1, pp. 80–90, 2006.
- A. Berryman and M. Lima, “Detecting the order of population dynamics from time series: nonlinearity causes spurious diagnosis,” Ecology, vol. 88, no. 8, pp. 2121–2123, 2007.
- B. Dennis, J. M. Ponciano, S. R. Lele, M. L. Taper, and D. F. Staples, “Estimating density dependence, process noise, and observation error,” Ecological Monographs, vol. 76, no. 3, pp. 323–341, 2006.
- W. F. Morris and D. F. Doak, Quantitative Conservation Biology, Sinauer Associates, Sunderland, Mass, USA, 2002.
- D. M. Bates and D. G. Watts, Nonlinear Regression Analysis and Its Applications, John Wiley & Sons, New York, NY, USA, 1988.
- R Development Core Team, R: A Language and Environment for Statistical Computing, ISBN 3-900051-07-0, R Foundation for Statistical Computing, Vienna, Austria, 2001.
- K. P. Burnham and D. R. Anderson, Model Selection and Multi-Model Inference, Springer, New York, NY, USA, 2nd edition, 2002.
- L. L. Eberhardt, J. M. Breiwick, and D. P. DeMaster, “Analyzing population growth curves,” Oikos, vol. 117, no. 8, pp. 1240–1246, 2008.
- F. C. Clark, B. W. Brook, S. Delean, H. R. Akçakaya, and C. J. A. Bradshaw, “The theta-logistic is unreliable for modeling most census data,” Methods in Ecology and Evolution, vol. 1, pp. 253–262, 2010.
- R. P. Freckleton, A. R. Watkinson, R. E. Green, and W. J. Sutherland, “Census error and the detection of density dependence,” Journal of Animal Ecology, vol. 75, no. 4, pp. 837–851, 2006.
- S. Loibel, J. B. R. do Val, and M. G. Andrade, “Inference for the Richards growth model using Box and Cox transformation and bootstrap techniques,” Ecological Modelling, vol. 191, no. 3-4, pp. 501–512, 2006.
- R. M. Sibly, D. Barker, J. Hone, and M. Pagel, “On the stability of populations of mammals, birds, fish and insects,” Ecology Letters, vol. 10, no. 10, pp. 970–976, 2007.
- C. P. Doncaster, “Non-linear density dependence in time series is not evidence of non-logistic growth,” Theoretical Population Biology, vol. 73, no. 4, pp. 483–489, 2008.
- J. P. Buonaccorsi and J. Staudenmayer, “Statistical methods to correct for observation error in a density-independent population model,” Ecological Monographs, vol. 79, no. 2, pp. 299–324, 2009.
- L. Polansky, P. de Valpine, J. O. Lloyd-Smith, and W. M. Getz, “Likelihood ridges and multimodality in population growth rate models,” Ecology, vol. 90, no. 8, pp. 2313–2320, 2009.
- W. E. Ricker, “Stock and recruitment,” Journal of the Fisheries Research Board of Canada, vol. 11, pp. 559–623, 1954.
- W. E. Ricker, “Computation and interpretation of biological statistics of fish populations,” Bulletin of the Fisheries Research Board of Canada, vol. 191, pp. 2–6, 1975.