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Volume 2013 (2013), Article ID 536529, 14 pages
Activated Ras as a Therapeutic Target: Constraints on Directly Targeting Ras Isoforms and Wild-Type versus Mutated Proteins
Department of Pharmacology, Wayne State University, 540 East Canfield Avenue, Detroit, MI 48201, USA
Received 15 September 2013; Accepted 4 October 2013
Academic Editors: M. Folini, M. Santarosa, and R. V. Sionov
Copyright © 2013 Raymond R. Mattingly. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
The ability to selectively and directly target activated Ras would provide immense utility for treatment of the numerous cancers that are driven by oncogenic Ras mutations. Patients with disorders driven by overactivated wild-type Ras proteins, such as type 1 neurofibromatosis, might also benefit from progress made in that context. Activated Ras is an extremely challenging direct drug target due to the inherent difficulties in disrupting the protein:protein interactions that underlie its activation and function. Major investments have been made to target Ras through indirect routes. Inhibition of farnesyl transferase to block Ras maturation has failed in large clinical trials. Likely reasons for this disappointing outcome include the significant and underappreciated differences in the isoforms of Ras. It is still plausible that inhibition of farnesyl transferase will prove effective for disease that is driven by activated H-Ras. The principal current focus of drugs entering clinic trial is inhibition of pathways downstream of activated Ras, for example, trametinib, a first-in-class MEK inhibitor. The complexity of signaling that is driven by activated Ras indicates that effective inhibition of oncogenic transduction through this approach will be difficult, with resistance being likely to emerge through switch to parallel pathways. Durable disease responses will probably require combinatorial block of several downstream targets.
1. Introduction: Ras Activation and Cancer
Ras proteins are key controllers of cellular growth and differentiation , with critical roles in the development [2, 3] and maintenance  of human tumors. As the prototypical small GTPase, Ras is regulated through an activation/deactivation cycle of exchange of GTP for GDP and subsequent GTP hydrolysis . The GTP-bound state is the active conformation that can couple to downstream effectors . The slow intrinsic rates of activation and deactivation of wild-type Ras allow catalytic control through exchange factors (GEFs) and GTPase-activating proteins (GAPs) . Although acute decrease in GAP activity was the first mechanism described for agonist-induced Ras activation [8, 9], most instances of acute Ras activation are probably due to regulation of GEF activity [10, 11].
About 30% of human cancers have a mutated Ras protein  that is constitutively bound to GTP  due to decreased GTPase activity and insensitivity to GAP action [14–16]. Ras is also an important factor in many cancers where it is not mutated but rather functionally activated through inappropriate activity of other signal transduction elements, for example, by overexpressed growth factor receptors in breast cancer [17, 18] or by loss of a GAP, such as in type 1 neurofibromatosis (NF1) . Thus there are at least three distinct routes to inappropriate Ras activation in cancer: (1) mutational activation of Ras itself, (2) excessive activation of the wild-type protein through upstream signaling leading to increased GEF activity, and (3) loss of a GAP function that is required to terminate activity of the wild-type protein. There are continuing efforts to understand whether there are significant differences in the activation state of Ras that is the result of these distinct mechanisms [20, 21].
There are four human Ras proteins (H-Ras, 2 splice variants of K-Ras, and N-Ras). Although their effector domains are identical, the isoforms clearly have some distinct and nonoverlapping functions [22, 23]. For example, only K-Ras is essential during mouse development . From the perspective of human disease it is most notable that K-Ras is mutated at high prevalence in particular forms of cancer, notably pancreatic, lung, and colon carcinomas, while mutated N-Ras is found at high rates in melanomas and some leukemias, and mutated H-Ras is a rarer finding that is present in some bladder, breast, and thyroid carcinomas . The main structural differences between the isoforms occur in the short hypervariable region just prior to their C-termini , and many groups have localized isoform-specific functions to this region [27–35]. The fact that oncogenic K-Ras function can be shown to depend on the endogenous activity of wild-type H- or N-Ras in at least some systems [27, 36] emphasizes the importance of understanding routes to inhibition of all the isoforms and both the mutated and intact states of Ras.
The Ras isoforms exhibit particular subcellular localizations [37, 38] that contribute both to the in situ selectivity of their activation and deactivation  and to isoform-specific downstream signaling . It is not entirely clear whether the limited biochemical and cell biological distinctions that are known to exist between these extremely similar proteins provide a full explanation for the striking functional differences found in the involvement of the isoforms in human disease or if there may be additional factors that are still to be elucidated. For example, in addition to differences at the protein level it is possible that there could be significant isoform selectivity exerted through processes such as microRNA regulation [41–43].
2. Approaches to Directly Inhibit Activated Ras
The identification of oncogenically mutated Ras in many human cancers led to major efforts in many academic laboratories and large and small drug companies to target this constitutively activated protein as a rational and selective treatment. There are several very significant challenges that have confronted these investigators and there has yet to be an effective drug with a mechanism of inhibition of activated Ras that has shown sufficient success in clinical trials to achieve approval for use in humans. It is notable that many of the effective drugs in current use are either natural products , most often botanicals, or semisynthetic/synthetic analogs thereof, and that about half of all drugs target G protein-coupled receptors by competing at the endogenous ligand binding site that is exposed at the cell surface . Ras does not have the characteristics that define these classes of premier drug targets. The only natural products that are known to target it are bacterial toxins, such as large clostridial cytotoxins, and these act enzymatically to produce a covalently modified Ras that is resistant to GAP . They thus do not provide a precedent that would help to guide the development of potentially useful small molecules that would restore GTPase activity. Further, Ras proteins are intracellular enzymes. Although small molecules can be designed to block many active sites, the problem presented by mutated Ras is due to loss of enzymatic activity (decreased GTPase function) that leads to a phenotypic gain of function (increased signaling activity). Thus, a small molecule that functioned to block the active site of Ras would be the opposite of what was desired and might presumably be oncogenic. The challenge of restoring enzymatic function to an impaired active site by use of a small molecule is very difficult. In the case of mutationally activated Ras proteins, landmark structural studies indicated that it may not be feasible to produce a small molecule that could replace the loss of GAP or GTPase activity that is the molecular mechanism driving the dysfunction .
The result of the loss of GAP or GTPase activity is that the Ras protein is inappropriately bound to GTP at too high a proportion and for too long a time. It was reasonable to speculate, therefore, that perhaps a small molecule could be designed to displace the GTP from the Ras protein, with encouragement provided by the ability of drugs to work competitively against the ATP binding site of protein kinases. The explosion of work in that area moved protein kinases into position as the second largest group of potential drug targets after the G protein-coupled receptors . Several druggable routes to kinase inhibition have been identified, with competition for ATP binding at the active site being the predominant molecular mechanism . Unfortunately, however, competition for the nucleotide binding site is not a promising approach for targeting activated Ras due to the kinetic parameters of Ras:GTP binding, which is characterized by a very high affinity (picomolar) in the context of millimolar cytosolic GTP levels . The situation of protein kinase inhibition is distinct because the affinity for ATP is typically micromolar in the context of millimolar cytosolic nucleotide pools and thus the nanomolar affinity that can be achieved with a good small molecule inhibitor is sufficient to be efficacious .
The result of Ras being bound to GTP is that it forms complexes with its downstream targets to drive oncogenic signaling. Disruption of intracellular protein:protein interactions is not an established approach for therapeutic targeting, but in vitro experiments using peptides and peptidomimetic agents have produced interesting results [52, 53]. The outstanding possibilities for new targets that would be revealed by such targeting, which could include transcription factors, were recognized by the National Cancer Institute in the form of a request for applications on this topic in their “provocative questions” series (http://provocativequestions.nci.nih.gov/archived-rfas-and-pqs/rfa-archive-2011/mainquestions_listview?mqCategory=Treatment). Despite some early progress , the Ras:effector interaction was characterized as “undruggable” as recently as 2010 in a study that demonstrated the potential value of this intervention by expression of a blocking antibody fragment . There has been continuing interest in whether Ras:effector binding could be susceptible to drug inhibition, culminating in a new report that provides significant and long awaited progress in this area . The authors demonstrate small molecules that can block the binding of H-Ras.GTP to c-Raf1 both in vitro and in vivo, that inhibit multiple Ras-driven pathways in cells, and that are orally active against a K-Ras mutation positive colon carcinoma xenograft.
There has also been recent progress in disruption of Ras protein:protein interactions at the level of its interaction with one of its upstream activator GEF proteins, Sos , including development of small molecule agents [58, 59]. Both of these latter studies began with an activated K-RasG12D construct, whereas the former investigated a system of wild-type Ras activation by upstream receptor tyrosine kinases. In this context it is worthwhile to consider the relative degrees to which mutated versus wild-type Ras proteins are reliant on interaction with GEFs in order to achieve the GTP-bound state . For example, it is likely that wild-type Ras proteins would be significantly more dependent on sustained GEF activity to maintain their activation state and so could be more vulnerable to targeting at this level . Another aspect to consider is the degree to which inhibitors of interactions between small GTPases and their GEFs will only block the stimulated rate of nucleotide exchange  or also affect the intrinsic rate of exchange . Overall, we do not yet know whether the same constraints and opportunities will apply to targeting wild-type Ras proteins that are being driven by upstream oncogenic signaling and to targeting mutationally activated Ras proteins.
3. Selection of Farnesyl Transferase as the Primary Target for Indirect Inhibition of Activated Ras
The absence of an obvious direct druggable target at the level of activated Ras itself led to a broader review of Ras biology to find an appropriate druggable enzyme. Ras isoforms are translated as soluble proteins on free ribosomes and then undergo a series of posttranslational modifications to achieve membrane attachment and the localization that is required for biological function. The first reaction is prenylation and is catalyzed by protein farnesyl transferase (FTase), with subsequent proteolysis and methylation modifications. FTase binds to proteins bearing a carboxyl-terminal motif referred to as a “CaaX box,” where C means cysteine, a means any residue (typically aliphatic), and X means serine, methionine, glutamine, or alanine  and transfers a farnesyl group from farnesyl pyrophosphate (FPP) to the sulfur on the cysteine side chain. A closely related enzyme catalyzes an alternative prenylation reaction. Protein geranylgeranyl transferase I (GGTase I) attaches a geranylgeranyl moiety from geranylgeranyl diphosphate (GGPP) to the cysteine in a similar CaaX box in different proteins, primarily those where leucine is the carboxyl-terminal residue. The prenylated protein (whether farnesylated or geranylgeranylated) then undergoes endoproteolytic cleavage of the aaX residues by the enzyme Rce1 and methylation of the resulting free carboxyl group by the enzyme isoprenylcysteine carboxyl methyltransferase (Icmt). The overall effect of these modifications is to convert a soluble peptide or protein into a hydrophobic, membrane-bound species. These posttranslational changes facilitate association with lipid membranes but also govern subcellular localization and regulate protein:protein interactions [62–64]. In addition to these steps, N-Ras, H-Ras, and K-Ras4A isoforms are further modified with the adjacent attachment of palmitate . K-Ras4B is not palmitoylated. A polylysine stretch of amino acids in the hypervariable region of this isoform confers additional targeting and association for its membrane localization .
The demonstration that posttranslational covalent modification of the CaaX box is essential for the transforming activity of Ras  provided the rationale that inhibiting the various enzymes responsible for this processing would suppress the transforming activity of mutant Ras. Presumably, improper posttranslational modification would lead to mislocalized and thus nonfunctional protein . Further, it was conjectured that mislocalized, constitutively-active Ras might recruit and sequester signaling molecules to inappropriate subcellular locations and so act as an inhibitor of Ras-driven signaling in tumor cells . If this scenario were realized then there could be some selective toxicity for cancer cells over other cells that only express wild-type Ras proteins.
The major focus of most therapeutic development for inhibition of Ras so far has thus been to block FTase, using farnesyl transferase inhibitors (FTIs) . The intense activity in this area was spurred by the dramatic tumor regressions seen in experimental animals with FTIs  and many potent FTIs of divergent structures were developed [71–73]. Two FTIs made it all the way to phase III clinical trials—R115777/Zarnestra/tipifarnib  and SCH66336/Sarasar/lonafarnib —before it was confirmed that they lack the anticipated activity against lung, colorectal, and pancreatic cancer .
4. Disappointment with FTIs in the Clinic: The Problem of Alternative Prenylation of K- and N-Ras
In retrospect, even before the large-scale clinical trials, many tumor cells that were positive for K-Ras mutations had been shown to be resistant to FTIs . Several factors may explain why FTIs are not as useful in the clinic as had been hoped. A major reason is probably that they were developed primarily using mutated H-Ras as an experimental target. Despite early assumptions that all the Ras isoforms would be similarly affected, only H-Ras is efficiently perturbed in FTI-treated tumors [78, 79]. N- and K-Ras are also in vitro substrates for GGTase I  and become geranylgeranylated in cells in the presence of FTIs [81, 82]. This alternative prenylation presumably allows N- and K-Ras to continue their maturation steps and become functional and thus circumvent the action of FTIs .
There has been some consideration of whether it could be possible to render N- and K-Ras sensitive to inhibition of prenylation, with demonstration of some encouraging results in vitro. Limitation of cellular prenyl substrate pools by treatment with statins (inhibitors of HMG CoA reductase) can potentiate the action of FTIs [83, 84]. This potentiation can be synergistic for combinations of statins with FTIs that are competitive with the FPP substrate of the enzyme [85–87]. A rationale for this combination approach of prenylation inhibitors [statin plus an FPP-competitive FTI] is to produce a block of FTase plus limitation of cellular pools of prenyl precursors. Decreased levels of FPP will intensify the FTase inhibition and decreased levels of GGPP will blunt the ability of N-Ras or K-Ras to become alternatively geranylgeranylated [86, 88]. Combinations of statin plus GGTase inhibitors also act synergistically to block prenylation . It is possible that the benefit of the combination approach with statins may not be restricted to FTIs that are competitive with FPP. For example, a combination of tipifarnib (a CaaX-competitive inhibitor) plus lovastatin can effectively block N-Ras and K-Ras processing in multiple myeloma cells . Whether this combination approach of statin + FTI would achieve a clinical benefit has not yet been tested.
5. Failure of FTase as a Therapeutic Target: Is There Still Promise for Treatment of H-Ras-Driven Disease?
The initial hope had been that FTIs would be effective drugs to treat cancers such as lung, colon, and pancreatic carcinomas that are often driven by mutated K-Ras and afflict huge numbers of patients. Their lack of efficacy in these diseases has focused attention on our current lack of ability to selectively inhibit oncogenic K-Ras [12, 91]. Similarly, mutant N-Ras that drives a significant fraction of malignant melanomas and some leukemias remains problematic despite the recent encouraging results with MEK inhibition as a downstream intervention , which is discussed further below.
On the other hand, and in view of the immense investment that has been put into the development and testing of FTIs, it is perhaps surprising that they do not seem to have been systematically tested in cancers that are driven by mutated H-Ras. Although much smaller in number, patients do present with cancers that have oncogenic H-Ras mutations and the available evidence would strongly suggest that FTIs could be a rational approach to their disease. With the increasing use of personalized medicine that will include profiling of the mutation status of tumors that will be coupled to pathway profiling to identify driving oncogenic mechanisms , it is possible that FTIs will eventually produce benefits in patients with disease that is driven through oncogenic H-Ras function. A recent analysis of the COSMIC database of human cancers indicates that about 3% of cases may harbor mutated H-Ras .
6. Role of H-Ras Activation in Learning and Memory
One complication with targeting Ras function for treatment of cancer will be if there are essential normal functions of the protein that would also be disrupted. In this regard it is important to note an emerging model, which is supported by human genetic disorders that result in learning deficits, that has Ras activation as a critical part of the synaptic remodeling process that underlies memory . For example, truncation mutations of SYNGAP1, a regulator of Ras in neurons, are found in patients with nonsyndromic mental retardation . At the mechanistic level, calcium-dependent Ras activation in neurons  is at least part of the calmodulin-dependent protein kinase II (CaMKII) mediated mechanism  through which excitatory, NMDA-type glutamate receptors lead to synaptic plasticity . Activation of Ras in dendritic spines [99, 100] is linked, presumably via classical Ras effectors such as extracellular signal-regulated kinase (ERK) mitogen-activated protein (MAP) kinases  and phosphatidylinositol (PI) 3-kinases , to synaptic remodeling . This remodeling is multifactorial: local modulation of the actin cytoskeleton, which drives morphological changes ; altered protein trafficking, which leads to potentiation of AMPA-type glutamate receptors ; and changes in transcription  and translation [107, 108]. While Ras proteins have the potential to drive all these events, other members of the Ras superfamily may also play important roles. For example Rap, which is linked to control of AMPA receptor trafficking [105, 109], and Rac , which is linked to control of the actin cytoskeleton , particularly via p21-activated kinase (PAK) , are also likely to be important in synaptic remodeling.
There is substantial evidence that there may be a specific role for the H-Ras isoform in control of synaptic plasticity. Costello syndrome, which has germline expression of activated H-Ras, includes neurological deficits . Further, induced expression of constitutively-active H-Ras.V12 in pyramidal neurons induces neuronal remodeling that is reflected in increases in the number of dendritic spines  and synaptic connectivity , while the H-Ras knock-out mouse has altered long-term potentiation (LTP) . Activated H-Ras also directs a presynaptic pathway that drives learning and memory .
H-Ras, as compared to K- and N-Ras, exhibits high expression levels in the neocortex, hippocampus, striatum, thalamus, and cerebellum, in an expression pattern similar to the GEF called Ras-GRF1 . H-Ras is the selective in situ substrate for Ras-GRF1 [118, 119]. Ras-GRF1 is highly expressed in certain CNS neurons [120, 121], and is particularly enriched in postsynaptic densities , where it can bind directly to the NMDA NR2B receptor and mediate its activation of ERK . Ras-GRF1 can also integrate signals from the modulatory G protein-coupled receptors that also control learning and memory [11, 124–126]. Mice deficient in Ras-GRF1 have learning deficits that include defects in hippocampal-dependent contextual memories [127, 128] and sensory memory formation . Interestingly, the Ras-GRF1 gene is at a susceptibility locus for myopia . Detailed analysis has revealed abnormalities in LTP , long-term depression (LTD) , neuronal excitability , and gene expression  in Ras-GRF1-deficient mice. Overall, in light of the increasing concern for the negative effects of traditional cancer chemotherapeutic treatments on cognition  and the possibility that targeted therapies will be most effective when combined with traditional modalities , the potential for Ras-directed therapy to also have an impact on learning and memory could be significant.
7. Targeting of Ras in Type 1 Neurofibromatosis (NF1)
Type 1 neurofibromatosis (NF1) is an autosomal dominant disorder that, with a birth incidence of approximately one in 3000, represents the most commonly inherited predisposition syndrome for both cancer and neurological problems [137, 138]. In addition to a variety of cutaneous, neurological, endocrine, cardiovascular, and orthopedic manifestations, patients typically develop one or more neurofibromas on their peripheral nerves . Benign neurofibromas are tumors that arise in nearly all NF1 patients and have been classified into dermal and plexiform types . Even though dermal neurofibromas do not represent an enhanced risk of progression to malignancy, they can impose a significant burden on the quality of life of NF1 patients. Plexiform neurofibromas are often large tumors that bear the additional risks of potential nerve compression leading to paralysis and progression to malignant peripheral nerve sheath tumors (MPNSTs) that are a main cause of mortality .
NF1 is caused by loss of expression of the tumor suppressor neurofibromin [142, 143], which is a GAP and potent negative regulator of Ras. Loss of neurofibromin compromises Ras inactivation and leads to constitutively active Ras-dependent signaling [144, 145]. In view of the rationale that NF1 is likely to be driven through inappropriate Ras activation, the FTI tipifarnib was tested in phase II clinical trial for pediatric NF1 patients with progressive plexiform neurofibromas, but positive responses have not been reported. In view of reports that human NF1 tumor cells exhibit constitutive activation of N- and K-Ras, but little or no H-Ras , and that the N-Ras activation in NF1 tumor cells drives ERK MAP kinase activation and transcriptional reprogramming [147, 148], it may not be surprising that tipifarnib did not produce significant benefit. Overall, the definition of the pathways that are driven by neurofibromin loss and N-Ras activation in NF1 tumors may reveal effective targets that will improve the treatment options for patients .
In addition to the prevalent cases of tumors and risk of cancers in NF1, there is an approximate 50% incidence of pediatric learning disorders . In light of the previous discussion of a role for H-Ras in the neurobiology of learning and memory, it is possible that central dysfunction of H-Ras underlies at least some of the neurological difficulties of NF1 patients, even if H-Ras may not be driving the tumors that arise peripherally in NF1. For example, the learning deficits in a mouse model of NF1 can be ameliorated by treatment with an FTI or genetic reduction of Ras activity . More surprisingly, since levels of statins that will impair the prenylation of proteins are hard to achieve in vivo [152, 153], lovastatin also improves cognitive function in a mouse model of NF1 with a mechanism proposed to be through decrease in Ras function . Lovastatin has entered clinical trial for pediatric NF1 patients based upon this rationale .
8. Other Mechanisms to Target Ras Maturation
After prenylation, the next two postprenylation processing steps of Ras processing are proteolytic cleavage of the carboxyl-terminal “aaX” tripeptide by Rce1 and methylation of the resulting carboxyl terminus by Icmt. In theory, inhibition of these steps might target prenylated variants of all Ras isoforms (both those that are farnesylated through the physiological pathway and those that are iatrogenically geranylgeranylated in the presence of FTIs) and so could provide alternative approaches to inhibit Ras activity. However, much less is known about the mechanism of action of these enzymes as compared to FTase, and the role of the methyl group in protein localization and function is also unclear, and so the effects of inhibition are even less predictable.
Young and coworkers have shown that targeted inactivation of the Icmt gene in mouse fibroblasts causes striking mislocalization of K-Ras [156, 157]. Oncogenic Ras transfected into these cells was not able to support cellular transformation [156, 158]. Furthermore, oncogenic Ras transfected into Icmt−/− embryonic stem cells inhibited cellular transformation, suggesting a crucial role for the methyl group [156, 159]. Additional studies confirm that methylation is required for the proper localization of Ras, but not for localization of the Rho proteins, a class of CaaX proteins that are modified by geranylgeranylation . This differential effect was linked to the fact that Ras is farnesylated and the Rho proteins are geranylgeranylated, which would suggest that Icmt inhibition will actually have a much more profound inhibitory effect on the activity of farnesylated proteins. Thus it may be conjectured that inhibiting Icmt will result in a phenotype similar to that observed when inhibiting FTase alone. Taken together, these data suggest that (i) inhibition of Icmt should lead to the mislocalization of farnesylated Ras but may not have detrimental effects on the function or localization of geranylgeranylated CaaX proteins; (ii) this mislocalization of Ras should interfere with its biological activity; and (iii) Icmt inhibitors are intriguing potential anticancer agents but might suffer from a similar limitation of activity due to the alternative prenylation pathway for K- and N-Ras. In this regard, a selective Icmt inhibitor (cysmethynil) blocks the growth of colon tumor cells in an Icmt-dependent manner  and reduces growth of PC3 prostate cancer cell xenografts .
Some progress has also been made toward selective Rce1 inhibitors . Overall, however, the effects produced by these inhibitors may not be related to effects on Ras, as opposed to other CaaX-containing proteins , and it is not clear why they would be any more clinically useful than the FTIs. Similar limitations in our lack of understanding of the detailed enzymology and function, plus the additional uncertainty provided by the reversibility of the modification, would apply to consideration of whether palmitoylation  could be blocked to decrease Ras activity.
The final step in Ras maturation is its insertion into the appropriate membrane locale for its functional activity. There is increasing evidence that the spatial organization of Ras proteins is tightly regulated . New information on this topic continues to emerge and clustering of Ras has been proposed to be a target for intervention . The insertion step has been targeted by compounds based on the farnesyl isoprenoid structure, farnesylthiosalicylic acid/salirasib , and TLN-4601 . Both of these drugs have entered single agent clinical trials, but the former was inactive against K-Ras mutation positive lung adenocarcinoma , and the latter was inactive against progressive glioblastoma multiforme . On the other hand, the results from a combination study of salirasib with gemcitabine for pancreatic adenocarcinoma were interpreted as sufficiently encouraging to warrant further investigation .
9. Indirect Targeting of Ras at the Level of Expression
The difficulty of directly targeting the activity of the Ras proteins themselves has produced a continuing interest in whether their expression level could be reduced as an alternative means to block their function. For example, early efforts pursued antisense approaches to inhibit expression of particular isoforms , with notable consequent reversion of malignant phenotype in vitro . However, translation of antisense reagents into the clinic has been difficult. In the context of cancer treatment, most progress was apparently made by oblimersen (which targets Bcl-2), but that has apparently stalled prior to confirmation of efficacy and approval . Development of antisense approaches to Ras may have stopped some years ago .
Regulation of the transcription and translation of Ras isoforms is under endogenous regulation that has also been proposed to provide potential opportunities for intervention. For example, the promoter of K-Ras includes a guanine-rich sequence that can form a G-quadruplex structure that regulates expression . The presence of such structures in human cellular DNA has recently been confirmed . From the perspective of potential therapeutic intervention it is encouraging that a range of already approved drugs  and novel agents  can bind to and stabilize G-quadruplex DNA structures. These compounds can thus regulate the expression and activity of Ras in in vitro systems . Major limitations on the potential translation of this work into the clinic may stem from the fact that the regulatory activity of G-quadruplex structures on transcription can be negative (for H-Ras) or positive (for K-Ras)  and from the increasing recognition that sequences compatible with the formation of G-quadruplex structures are widespread in the human genome . It is hard to envisage how modulation of this DNA structural element could lead to a useful and selective therapeutic action in the context of Ras targeting.
Another endogenous mechanism to regulate the expression of Ras is through the noncoding regulatory RNAs called microRNAs or miRs. This property was first discovered in the let-7 suppression of Ras expression in C. elegans , with demonstration that such regulation is conserved for human N-Ras, K-Ras , and H-Ras . Subsequent work has demonstrated that there can be isoform selectivity in miR action, with miR-18a*, miR-96, and miR-622 all having tumor suppressor activity through decrease of K-Ras expression [41–43]. Expression of particular miRs may also affect clinical outcome and response to therapy in K-Ras-driven tumors . The first clinical trial of a miR agent in cancer has recently begun [http://clinicaltrials.gov/ct2/show/NCT01829971]. They are testing a modified version of miR-34, which would be expected to target the p53 pathway . Whether the miR approach will prove clinically useful and adaptable to selective targeting of Ras is, therefore, currently unknown.
10. Targeting Pathways Downstream of Activated Ras
The principal focus of recent efforts at inhibition of Ras function has shifted to the development of selective inhibitors of the downstream pathways that are driven by activated Ras . Validation of this downstream approach is provided by the recent FDA approval of the mitogen-activated protein kinase (MAPK) kinase (MEK) inhibitor trametinib [186, 187]. Notably another MEK inhibitor, MEK162, has shown promising results in patients whose melanoma is positive for mutated N-Ras .
Despite the very encouraging recent results with MEK inhibitors, it is reasonable to speculate whether intervening in the downstream pathways driven by activated Ras may ultimately prove less effective than the putative ability to target directly at the level of Ras itself. Because of the wide divergence of potential signaling mechanisms driven by activated Ras [189–195], it may be difficult to get effective overall inhibition unless the signal is stopped at the source. When the driving oncogenic signal from activated Ras is transmitted through multiple pathways then presumably effective block will require combinatorial inhibition of all the relevant downstream events. It can be challenging to even define the pathway through which the Ras oncogenic signal is being transmitted in situ because the dependence on different pathways can vary with experimental conditions .
In the event that clinical situations can be identified where the Ras-driven signal may be predominantly through a single pathway, such as that through ERK MAPK that can be selectively blocked with MEK inhibitors, there would presumably be high potential for resistance to develop via selection of a subclone that has oncogenic signaling through, for example, the PI 3-kinase/Akt pathway. In melanoma cells that are driven by mutated N-Ras, combined targeting of both MEK and mTOR, which is downstream of PI 3-kinase/Akt, is required for effective inhibition and actually produces a synergistic benefit in culture and xenograft studies . The best available result, even with an effective drug that had excellent pharmacokinetic and pharmacodynamic properties that allowed selective and durable target inhibition with acceptable levels of toxicity, might therefore be a transient beneficial effect that is truncated due to a switch to another pathway that is not inhibited. While extremely encouraging, the results from targeting within the pathways downstream of activated Ras do indicate that responses may be short lived .
The example of targeting melanoma that is driven through oncogenic mutant Raf with the inhibitors vemurafenib and dabrafenib also provides several interesting lessons that are likely to be relevant to any Ras-directed therapy that is developed. First, effective targeting of the driving oncogenic event may produce extremely exciting and dramatic responses in at least a subset of patients [198–202]. Second, that resistance will emerge . Third, that investigation of the patterns of inherent and acquired resistance to the targeted inhibitor will reveal significant new information about even signaling pathways that had been considered to be well characterized [204–208]. Encouragingly, pursuit of this new information will help to guide further iterations of inhibitors and their use that may provide further incremental improvements in patient survival [209–211].
The recognition that driving, oncogenic Ras mutations are prevalent in human cancer, together with the early studies that identified the molecular defect, gave promise that rationally designed, targeted therapeutics for a broad swath of cancers would follow. The great disappointment that has come from the failure of the FTIs in large-scale, phase III clinical trials has led to a necessary reassessment of the field. At a fundamental level the basic difficulty was recognized very early on: although the oncogenic mutations in Ras produce phenotypic gain-of-function, the actual molecular mechanism is one of loss-of-function in that the system is missing the necessary GTPase activity and GAP interaction. In that regard, activated Ras could be viewed as perhaps as difficult a target as the lost tumor suppressor functions, for example, p53, that are also often prevalent in human cancer and that have proved to be extremely challenging to exploit therapeutically. The barriers to direct targeting of activated Ras contributed to the rationale for inhibition of FTase as a druggable route. It is unfortunate that so much of the preclinical work on FTIs focused on systems with mutated H-Ras and somewhat surprising that the momentum behind FTIs remained so strong that the large clinical trials went ahead on lung, colon, and pancreatic carcinoma even though it was already clear at that stage that K- and N-Ras could circumvent effective FTase inhibition by an alternative pathway of geranylgeranylation. Whether the FTIs might actually be useful for patients with disease that is driven by rarer mutations in H-Ras does not seem to have been systematically investigated but perhaps could result from the growing trend of personalized medicine.
The failure of the FTIs to show efficacy in the Ras-driven cancers tested has left inhibition of the pathways downstream of Ras as the principal approaches currently in the clinic. It is extremely exciting that trametinib has just received FDA approval as the first-in-class with MEK inhibition as its mechanism of action. There are, however, a multitude of signaling pathways that can be driven by activated Ras, and thus it seems likely that inhibition of any one of these pathways may not lead to durable responses. Overall, effective block of activated Ras itself is still a desirable goal that has proven to be difficult to obtain due to several very significant theoretical and technical hurdles. Thus it is extremely encouraging that there has recently been preclinical progress in targeting of the protein:protein interactions that Ras makes with both its upstream effectors and downstream effectors. If the formidable problems of direct targeting of Ras can be overcome, then effective treatments for a broad range of human cancers could eventually result.
|CaaX:||A carboxyl-terminal motif where C means cysteine, a means any residue (typically aliphatic), and X means a variety of amino acids, particularly serine, methionine, glutamine, alanine, or leucine|
|CaMKII:||Calmodulin-dependent protein kinase II|
|ERK:||Extracellular signal-regulated kinase|
|FTase:||Protein farnesyl transferase|
|GEF:||Guanine nucleotide exchange factors|
|Protein geranylgeranyl transferase I|
|Icmt:||Isoprenylcysteine carboxyl methyltransferase|
|MAPK:||Mitogen-activated protein kinase|
|MEK:||MAPK or ERK kinase|
|MPNST:||Malignant peripheral nerve sheath tumor|
|NF1:||Type 1 neurofibromatosis|
This work has been supported by Grants from the National Cancer Institute [R01 CA81150 and R01 CA131990] and from the Department of the Army [NF990035, NF020054, NF043107, and NF093146] and by philanthropic support from Dan and Jennifer Gilbert. The author gratefully acknowledges his longstanding and valuable collaborations with Professors Richard A. Gibbs and John J. Reiners Jr. on several aspects of this work. The author declares that he has no conflict of interests relevant to the subject of this paper.
- C. J. Marshall, “The ras oncogenes,” Journal of Cell Science, no. 10, pp. 157–169, 1988.
- M. S. McCoy, J. J. Toole, and J. M. Cunningham, “Characterization of a human colon/lung carcinoma oncogene,” Nature, vol. 302, no. 5903, pp. 79–81, 1983.
- W. C. Hahn, C. M. Counter, A. S. Lundberg, R. L. Beijersbergen, M. W. Brooks, and R. A. Weinberg, “Creation of human tumour cells with defined genetic elements,” Nature, vol. 400, no. 6743, pp. 464–468, 1999.
- L. Chin, A. Tam, J. Pomerantz et al., “Essential role for oncogenic ras in tumour maintenance,” Nature, vol. 400, no. 6743, pp. 468–472, 1999.
- I. G. Macara, “The ras superfamily of molecular switches,” Cellular Signalling, vol. 3, no. 3, pp. 179–187, 1991.
- S. A. Moodie, B. M. Willumsen, M. J. Weber, and A. Wolfman, “Complexes of Ras·GTP with Raf-1 and mitogen-activated protein kinase kinase,” Science, vol. 260, no. 5114, pp. 1658–1661, 1993.
- M. S. Boguski and F. McCormick, “Proteins regulating Ras and its relatives,” Nature, vol. 366, no. 6456, pp. 643–654, 1993.
- J. Downward, J. D. Graves, P. H. Warne, S. Rayter, and D. A. Cantrell, “Stimulation of p21(ras) upon T-cell activation,” Nature, vol. 346, no. 6286, pp. 719–723, 1990.
- M. Torti, K. B. Marti, D. Altschuler, K. Yamamoto, and E. G. Lapetina, “Erythropoietin induces p21(ras) activation and p120GAP tyrosine phosphorylation in human erythroleukemia cells,” Journal of Biological Chemistry, vol. 267, no. 12, pp. 8293–8298, 1992.
- K. Zhang, A. G. Papageorge, and D. R. Lowy, “Mechanistic aspects of signaling through Ras in NIH 3T3 cells,” Science, vol. 257, no. 5070, pp. 671–674, 1992.
- R. R. Mattingly and I. G. Macara, “Phosphorylatlon-dependent activation of the Ras-GRF/CDC25(Mm) exchange factor by muscarinic receptors and G-protein βγ subunits,” Nature, vol. 382, no. 6588, pp. 268–272, 1996.
- A. T. Baines, D. Xu, and C. J. Der, “Inhibition of Ras for cancer treatment: the search continues,” Future Medicinal Chemistry, vol. 3, no. 14, pp. 1787–1808, 2011.
- M. Verlaan-De Vries, M. E. Bogaard, and H. Van Den Elst, “A dot-blot screening procedure for mutated ras oncogenes using synthetic oligodeoxynucleotides,” Gene, vol. 50, no. 1–3, pp. 313–320, 1986.
- J. B. Gibbs, I. S. Sigal, M. Poe, and E. M. Scolnick, “Intrinsic GTPase activity distinguishes normal and oncogenic ras p21 molecules,” Proceedings of the National Academy of Sciences of the United States of America, vol. 81, no. 18, pp. 5704–5708, 1984.
- G. Bollag and F. McCormick, “Differential regulation of rasGAP and neurofibromatosis gene product activities,” Nature, vol. 351, no. 6327, pp. 576–579, 1991.
- U. Krengel, I. Schlichting, A. Scherer et al., “Three-dimensional strucutures of H-ras p21 mutants: molecular basis for their inability to function as signal switch molecules,” Cell, vol. 62, no. 3, pp. 539–548, 1990.
- S. Malaney and R. J. Daly, “The Ras signaling pathway in mammary tumorigenesis and metastasis,” Journal of Mammary Gland Biology and Neoplasia, vol. 6, no. 1, pp. 101–113, 2001.
- G. J. Clark and C. J. Der, “Aberrant function of the Ras signal transduction pathway in human breast cancer,” Breast Cancer Research and Treatment, vol. 35, no. 1, pp. 133–144, 1995.
- J. E. DeClue, A. G. Papageorge, J. A. Fletcher et al., “Abnormal regulation of mammalian p21(ras) contributes to malignant tumor growth in von Recklinghausen (type 1) neurofibromatosis,” Cell, vol. 69, no. 2, pp. 265–273, 1992.
- S. Muraoka, F. Shima, M. Araki et al., et al., “Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants,” FEBS Letters, vol. 586, pp. 1715–1718, 2012.
- M. Spoerner, C. Hozsa, J. A. Poetzl et al., “Conformational states of human rat sarcoma (Ras) protein complexed with its natural ligand GTP and their role for effector interaction and GTP hydrolysis,” Journal of Biological Chemistry, vol. 285, no. 51, pp. 39768–39778, 2010.
- P. P. Fotiadou, C. Takahashi, H. N. Rajabi, and M. E. Ewen, “Wild-type NRas and KRas perform distinct functions during transformation,” Molecular and Cellular Biology, vol. 27, no. 19, pp. 6742–6755, 2007.
- E. Castellano and E. Santos, “Functional specificity of Ras isoforms: so similar but so different,” Genes and Cancer, vol. 2, no. 3, pp. 216–231, 2011.
- L. M. Esteban, C. Vicario-Abejon, P. Fernández-Salguero et al., “Targeted genomic disruption of H-ras and N-ras, individually or in combination, reveals the dispensability of both loci for mouse growth and development,” Molecular and Cellular Biology, vol. 21, no. 5, pp. 1444–1452, 2001.
- S. Rodenhuis, “ras and human tumors,” Seminars in Cancer Biology, vol. 3, no. 4, pp. 241–247, 1992.
- J. P. ten Klooster and P. L. Hordijk, “Targeting and localized signalling by small GTPases,” Biology of the Cell, vol. 99, no. 1, pp. 1–12, 2007.
- K.-H. Lim, B. B. Ancrile, D. F. Kashatus, and C. M. Counter, “Tumour maintenance is mediated by eNOS,” Nature, vol. 452, no. 7187, pp. 646–649, 2008.
- C. L. Oeste, B. Díez-Dacal, F. Bray et al., “The C-terminus of H-ras as a target for the covalent binding of reactive compounds modulating Ras-dependent pathways,” PLoS ONE, vol. 6, Article ID e15866, 2011.
- H.-Y. Yong, J.-S. Hwang, H. Son et al., “Identification of H-Ras-Specific motif for the activation of invasive signaling program in human breast epithelial cells,” Neoplasia, vol. 13, no. 2, pp. 98–107, 2011.
- C. Barcelo, N. Paco, A. J. Beckett et al., “Oncogenic K-Ras segregates at spatially distinct plasma membrane signaling platforms according to its phosphorylation status,” Journal of Cell Science, vol. 126, pp. 4553–4559, 2013.
- S. Kapoor, K. Weise, M. Erlkamp, G. Triola, H. Waldmann, and R. Winter, “The role of G-domain orientation and nucleotide state on the Ras isoform-specific membrane interaction,” European Biophysics Journal, vol. 41, pp. 801–813, 2012.
- J. Xu, C. Hedberg, F. J. Dekker et al., “Inhibiting the palmitoylation/depalmitoylation cycle selectively reduces the growth of hematopoietic cells expressing oncogenic Nras,” Blood, vol. 119, no. 4, pp. 1032–1035, 2012.
- S. J. Abraham, R. P. Nolet, R. J. Calvert, L. M. Anderson, and V. Gaponenko, “The hypervariable region of K-Ras4B is responsible for its specific interactions with calmodulin,” Biochemistry, vol. 48, no. 32, pp. 7575–7583, 2009.
- P. Saikumar, L. S. Ulsh, D. J. Clanton, and K.-P. Huang, “Novel phosphorylation of c-ras p21 by protein kinases,” Oncogene Research, vol. 3, no. 3, pp. 213–222, 1988.
- D. Abankwa, A. A. Gorfe, K. Inder, and J. F. Hancock, “Ras membrane orientation and nanodomain localization generate isoform diversity,” Proceedings of the National Academy of Sciences of the United States of America, vol. 107, no. 3, pp. 1130–1135, 2010.
- C. Bentley, S. S. Jurinka, N. M. Kljavin et al., et al., “A requirement for wild-type Ras isoforms in mutant KRas-driven signalling and transformation,” The Biochemical Journal, vol. 452, pp. 313–320, 2013.
- I. A. Prior, C. Muncke, R. G. Parton, and J. F. Hancock, “Direct visualization of ras proteins in spatially distinct cell surface microdomains,” Journal of Cell Biology, vol. 160, no. 2, pp. 165–170, 2003.
- V. K. Chiu, T. Bivona, A. Hach et al., “Ras signalling on the endoplasmic reticulum and the Golgi,” Nature Cell Biology, vol. 4, no. 5, pp. 343–350, 2002.
- I. Arozarena, D. Matallanas, M. T. Berciano et al., “Activation of H-Ras in the endoplasmic reticulum by the rasgrf family guanine nucleotide exchange factors,” Molecular and Cellular Biology, vol. 24, no. 4, pp. 1516–1530, 2004.
- M. Hamilton and A. Wolfman, “Ha-ras and N-ras regulate MAPK activity by distinct mechanisms in vivo,” Oncogene, vol. 16, no. 11, pp. 1417–1428, 1998.
- Z. Han, Q. Yang, B. Liu et al., “MicroRNA-622 functions as a tumor suppressor by targeting K-Ras and enhancing the anticarcinogenic effect of resveratrol,” Carcinogenesis, vol. 33, no. 1, pp. 131–139, 2012.
- W. P. Tsang and T. T. Kwok, “The miR-18a* microRNA functions as a potential tumor suppressor by targeting on K-Ras,” Carcinogenesis, vol. 30, no. 6, pp. 953–959, 2009.
- S. Yu, Z. Lu, C. Liu et al., “miRNA-96 suppresses KRAS and functions as a tumor suppressor gene in pancreatic cancer,” Cancer Research, vol. 70, no. 14, pp. 6015–6025, 2010.
- B. B. Mishra and V. K. Tiwari, “Natural products: an evolving role in future drug discovery,” European Journal of Medicinal Chemistry, vol. 46, no. 10, pp. 4769–4807, 2011.
- S. L. Garland, “Are GPCRs still a source of new targets?” Journal of Biomolecular Screening, vol. 18, pp. 947–966, 2013.
- J. Schirmer and K. Aktories, “Large clostridial cytotoxins: cellular biology of Rho/Ras-glucosylating toxins,” Biochimica et Biophysica Acta, vol. 1673, no. 1-2, pp. 66–74, 2004.
- K. Scheffzek, M. R. Ahmadian, W. Kabsch et al., “The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic ras mutants,” Science, vol. 277, no. 5324, pp. 333–338, 1997.
- P. Cohen, “Protein kinases—the major drug targets of the twenty-first century?” Nature Reviews Drug Discovery, vol. 1, no. 4, pp. 309–315, 2002.
- Q. Liu, Y. Sabnis, Z. Zhao et al., “Developing irreversible inhibitors of the protein kinase cysteinome,” Chemical & Biology, vol. 20, pp. 146–159, 2013.
- J. John, H. Rensland, I. Schlichting et al., “Kinetic and structural analysis of the Mg2+-binding site of the guanine nucleotide-binding protein p21(H-ras),” Journal of Biological Chemistry, vol. 268, no. 2, pp. 923–929, 1993.
- P. G. Goekjian and M. R. Jirousek, “Protein kinase C in the treatment of disease: signal transduction pathways, inhibitors, and agents in development,” Current Medicinal Chemistry, vol. 6, no. 9, pp. 877–903, 1999.
- M. Fetchko, D. Auerbach, and I. Stagljar, “Yeast genetic methods for the detection of membrane protein interactions: potential use in drug discovery,” BioDrugs, vol. 17, no. 6, pp. 413–424, 2003.
- V. Azzarito, K. Long, N. S. Murphy, and A. J. Wilson, “Inhibition of alpha-helix-mediated protein-protein interactions using designed molecules,” Nature Chemistry, vol. 5, pp. 161–173, 2013.
- J. Kato-Stankiewicz, I. Hakimi, G. Zhi et al., “Inhibitors of Ras/Raf-1 interaction identified by two-hybrid screening revert Ras-dependent transformation phenotypes in human cancer cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 22, pp. 14398–14403, 2002.
- T. Tanaka and T. H. Rabbitts, “Interfering with RAS-effector protein interactions prevent RAS-dependent tumour initiation and causes stop-start control of cancer growth,” Oncogene, vol. 29, no. 45, pp. 6064–6070, 2010.
- F. Shima, Y. Yoshikawa, M. Ye et al., et al., “In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction,” Proceedings of the National Academy of Sciences of the United States of America, vol. 110, pp. 8182–8187, 2013.
- A. Patgiri, K. K. Yadav, P. S. Arora, and D. Bar-Sagi, “An orthosteric inhibitor of the Ras-Sos interaction,” Nature Chemical Biology, vol. 7, no. 9, pp. 585–587, 2011.
- T. Maurer, L. S. Garrenton, A. Oh et al., “Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity,” Proceedings of the National Academy of Sciences of the United States of America, vol. 109, no. 14, pp. 5299–5304, 2012.
- Q. Sun, J. P. Burke, J. Phan et al., “Discovery of small molecules that bind to K-Ras and inhibit Sos-mediated activation,” Angewandte Chemie International Edition, vol. 51, pp. 6140–6143, 2012.
- A. Shutes, C. Onesto, V. Picard, B. Leblond, F. Schweighoffer, and C. J. Der, “Specificity and mechanism of action of EHT 1864, a novel small molecule inhibitor of Rac family small GTPases,” Journal of Biological Chemistry, vol. 282, no. 49, pp. 35666–35678, 2007.
- H.-W. Fu and P. J. Casey, “Enzymology and biology of CaaX protein prenylation,” Recent Progress in Hormone Research, vol. 54, pp. 315–343, 1999.
- I. Rubio, U. Wittig, C. Meyer et al., “Farnesylation of Ras is important for the interaction with phosphoinositide 3-kinase γ,” European Journal of Biochemistry, vol. 266, no. 1, pp. 70–82, 1999.
- S. Roy, S. Plowman, B. Rotblat et al., “Individual palmitoyl residues serve distinct roles in H-ras trafficking, microlocalization, and signaling,” Molecular and Cellular Biology, vol. 25, no. 15, pp. 6722–6733, 2005.
- A. A. Gorfe, “Mechanisms of allostery and membrane attachment in Ras GTPases: implications for anti-cancer drug discovery,” Current Medicinal Chemistry, vol. 17, no. 1, pp. 1–9, 2010.
- J. F. Hancock, H. Paterson, and C. J. Marshall, “A polybasic domain or palmitoylation is required in addition to the CAAX motif to localize p21(ras) to the plasma membrane,” Cell, vol. 63, no. 1, pp. 133–139, 1990.
- R. Kim, J. Rine, and S.-H. Kim, “Prenylation of mammalian Ras protein in Xenopus oocytes,” Molecular and Cellular Biology, vol. 10, no. 11, pp. 5945–5949, 1990.
- A. D. Basso, P. Kirschmeier, and W. R. Bishop, “Farnesyl transferase inhibitors,” Journal of Lipid Research, vol. 47, no. 1, pp. 15–31, 2006.
- J. B. Gibbs, A. Oliff, and N. E. Kohl, “Farnesyltransferase inhibitors: Ras research yields a potential cancer therapeutic,” Cell, vol. 77, no. 2, pp. 175–178, 1994.
- A. A. Adjei, “Blocking oncogenic Ras signaling for cancer therapy,” Journal of the National Cancer Institute, vol. 93, no. 14, pp. 1062–1074, 2001.
- N. E. Kohl, C. A. Omer, M. W. Conner et al., “Inhibition of farnesyltransferase induces regression of mammary and salivary carcinomas in ras transgenic mice,” Nature Medicine, vol. 1, no. 8, pp. 792–797, 1995.
- R. A. Gibbs, T. J. Zahn, and J. S. Sebolt-Leopold, “Non-peptidic prenyltransferase inhibitors: diverse structural classes and surprising anti-cancer mechanisms,” Current Medicinal Chemistry, vol. 8, no. 12, pp. 1437–1465, 2001.
- T. B. Brunner, S. M. Hahn, A. K. Gupta, R. J. Muschel, W. G. McKenna, and E. J. Bernhard, “Farnesyltransferase inhibitors: an overview of the results of preclinical and clinical investigations,” Cancer Research, vol. 63, no. 18, pp. 5656–5668, 2003.
- I. M. Bell, “Inhibitors of farnesyltransferase: a rational approach to cancer chemotherapy?” Journal of Medicinal Chemistry, vol. 47, no. 8, pp. 1869–1878, 2004.
- J. Zujewski, I. D. Horak, C. J. Bol et al., “Phase I and pharmacokinetic study of farnesyl protein transferase inhibitor R115777 in advanced cancer,” Journal of Clinical Oncology, vol. 18, no. 4, pp. 927–941, 2000.
- A. A. Adjei, C. Erlichman, J. N. Davis et al., “A phase I trial of the farnesyl transferase inhibitor SCH66336: evidence for biological and clinical activity,” Cancer Research, vol. 60, no. 7, pp. 1871–1877, 2000.
- A. M. Tsimberidou, C. Chandhasin, and R. Kurzrock, “Farnesyltransferase inhibitors: where are we now?” Expert Opinion on Investigational Drugs, vol. 19, no. 12, pp. 1569–1580, 2010.
- L. Sepp-Lorenzino, Z. Ma, E. Rands et al., “A peptidomimetic inhibitor of farnesyl:protein transferase blocks the anchorage-dependent and -independent growth of human tumor cell lines,” Cancer Research, vol. 55, no. 22, pp. 5302–5309, 1995.
- C. A. Omer, Z. Chen, R. E. Diehl et al., “Mouse mammary tumor virus-Ki-rasB transgenic mice develop mammary carcinomas that can be growth-inhibited by a farnesyl:protein transferase inhibitor,” Cancer Research, vol. 60, no. 10, pp. 2680–2688, 2000.
- R. Mangues, T. Corral, N. E. Kohl et al., “Antitumor effect of a farnesyl protein transferase inhibitor in mammary and lymphoid tumors overexpressing N-ras in transgenic mice,” Cancer Research, vol. 58, no. 6, pp. 1253–1259, 1998.
- F. L. Zhang, P. Kirschmeier, D. Carr et al., “Characterization of Ha-Ras, N-Ras, Ki-Ras4A, and Ki-Ras4B as in vitro substrates for farnesyl protein transferase and geranylgeranyl protein transferase type I,” Journal of Biological Chemistry, vol. 272, no. 15, pp. 10232–10239, 1997.
- C. A. Rowell, J. J. Kowalczyk, M. D. Lewis, and A. M. Garcia, “Direct demonstration of geranylgeranylation and farnesylation of Ki-Ras in vivo,” Journal of Biological Chemistry, vol. 272, no. 22, pp. 14093–14097, 1997.
- D. B. Whyte, P. Kirschmeier, T. N. Hockenberry et al., “K- and N-Ras are geranylgeranylated in cells treated with farnesyl protein transferase inhibitors,” Journal of Biological Chemistry, vol. 272, no. 22, pp. 14459–14464, 1997.
- B. S. Gibbs, T. J. Zahn, Y. Mu, J. S. Sebolt-Leopold, and R. A. Gibbs, “Novel farnesol and geranylgeraniol analogues: a potential new class of anticancer agents directed against protein prenylation,” Journal of Medicinal Chemistry, vol. 42, no. 19, pp. 3800–3808, 1999.
- R. R. Mattingly, R. A. Gibbs, R. E. Menard, and J. J. Reiners Jr., “Potent suppression of proliferation of A10 vascular smooth muscle cells by combined treatment with lovastatin and 3-allylfarnesol, an inhibitor of protein farnesyltransferase,” Journal of Pharmacology and Experimental Therapeutics, vol. 303, no. 1, pp. 74–81, 2002.
- J. W. Wojtkowiak, F. Fouad, D. T. Lalonde et al., “Induction of apoptosis in neurofibromatosis type 1 malignant peripheral nerve sheath tumor cell lines by a combination of novel farnesyl transferase inhibitors and lovastatin,” Journal of Pharmacology and Experimental Therapeutics, vol. 326, no. 1, pp. 1–11, 2008.
- J. W. Wojtkowiak, R. A. Gibbs, and R. R. Mattingly, “Working together: farnesyl transferase inhibitors and statins block protein prenylation,” Molecular and Cellular Pharmacology, vol. 1, no. 1, pp. 1–6, 2009.
- M. K. Clark, S. A. Scott, J. Wojtkowiak et al., “Synthesis, biochemical, and cellular evaluation of farnesyl monophosphate prodrugs as farnesyltransferase inhibitors,” Journal of Medicinal Chemistry, vol. 50, no. 14, pp. 3274–3282, 2007.
- J. W. Wojtkowiak, K. M. Sane, M. Kleinman, B. F. Sloane, J. J. Reiners Jr., and R. R. Mattingly, “Aborted autophagy and nonapoptotic death induced by farnesyl transferase inhibitor and lovastatin,” Journal of Pharmacology and Experimental Therapeutics, vol. 337, no. 1, pp. 65–74, 2011.
- K. M. Sane, M. Mynderse, D. T. LaLonde et al., “A novel geranylgeranyl transferase inhibitor in combination with lovastatin inhibits proliferation and induces autophagy in STS-26T MPNST cells,” Journal of Pharmacology and Experimental Therapeutics, vol. 333, no. 1, pp. 23–33, 2010.
- M. A. Morgan, T. Sebil, E. Aydilek, D. Peest, A. Ganser, and C. W. M. Reuter, “Combining prenylation inhibitors causes synergistic cytotoxicity, apoptosis and disruption of RAS-to-MAP kinase signalling in multiple myeloma cells,” British Journal of Haematology, vol. 130, no. 6, pp. 912–925, 2005.
- Y. Wang, C. E. Kaiser, B. Frett, and H. Y. Li, “Targeting mutant KRAS for anticancer therapeutics: a review of novel small molecule modulators,” Journal of Medicinal Chemistry, vol. 56, no. 13, pp. 5219–5230, 2013.
- C. Posch and S. Ortiz-Urda, “NRAS mutant melanoma—undrugable?” Oncotarget, vol. 4, pp. 494–495, 2013.
- H. Kaur, S. Mao, S. Shah et al., “Next-generation sequencing: a powerful tool for the discovery of molecular markers in breast ductal carcinoma in situ,” Expert Review of Molecular Diagnostics, vol. 13, pp. 151–165, 2013.
- E. J. Weeber and J. D. Sweatt, “Molecular neurobiology of human cognition,” Neuron, vol. 33, no. 6, pp. 845–848, 2002.
- F. F. Hamdan, J. Gauthier, D. Spiegelman et al., “Mutations in SYNGAPL in autosomai nonsyndromic mental retardation,” The New England Journal of Medicine, vol. 360, no. 6, pp. 599–605, 2009.
- L. B. Rosen, D. D. Ginty, M. J. Weber, and M. E. Greenberg, “Membrane depolarization and calcium influx stimulate MEK and MAP kinase via activation of Ras,” Neuron, vol. 12, no. 6, pp. 1207–1221, 1994.
- J. M. Schmitt, E. S. Guire, T. Saneyoshi, and T. R. Soderling, “Calmodulin-dependent kinase kinase/calmodulin kinase I activity gates extracellular-regulated kinase-dependent long-term potentiation,” Journal of Neuroscience, vol. 25, no. 5, pp. 1281–1290, 2005.
- H.-Y. Yun, M. Gonzalez-Zulueta, V. L. Dawson, and T. M. Dawson, “Nitric oxide mediates N-methyl-D-aspartate receptor-induced activation of p21ras,” Proceedings of the National Academy of Sciences of the United States of America, vol. 95, no. 10, pp. 5773–5778, 1998.
- M. B. Kennedy, H. C. Beale, H. J. Carlisle, and L. R. Washburn, “Integration of biochemical signalling in spines,” Nature Reviews Neuroscience, vol. 6, no. 6, pp. 423–434, 2005.
- R. Yasuda, C. D. Harvey, H. Zhong, A. Sobczyk, L. Van Aelst, and K. Svoboda, “Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging,” Nature Neuroscience, vol. 9, no. 3, pp. 283–291, 2006.
- J. D. English and J. D. Sweatt, “A requirement for the mitogen-activated protein kinase cascade in hippocampal long term potentiation,” Journal of Biological Chemistry, vol. 272, no. 31, pp. 19103–19106, 1997.
- V. Kumar, M.-X. Zhang, M. W. Swank, J. Kunz, and G.-Y. Wu, “Regulation of dendritic morphogenesis by Ras-PI3K-Akt-mTOR and Ras-MAPK signaling pathways,” Journal of Neuroscience, vol. 25, no. 49, pp. 11288–11299, 2005.
- Y. Qin, Y. Zhu, J. P. Baumgart et al., “State-dependent Ras signaling and AMPA receptor trafficking,” Genes and Development, vol. 19, no. 17, pp. 2000–2015, 2005.
- T. Tada and M. Sheng, “Molecular mechanisms of dendritic spine morphogenesis,” Current Opinion in Neurobiology, vol. 16, no. 1, pp. 95–101, 2006.
- J. J. Zhu, Y. Qin, M. Zhao, L. Van Aelst, and R. Malinow, “Ras and Rap control AMPA receptor trafficking during synaptic plasticity,” Cell, vol. 110, no. 4, pp. 443–455, 2002.
- M. Goldin and M. Segal, “Protein kinase C and ERK involvement in dendritic spine plasticity in cultured rodent hippocampal neurons,” European Journal of Neuroscience, vol. 17, no. 12, pp. 2529–2539, 2003.
- R. J. Kelleher III, A. Govindarajan, H.-Y. Jung, H. Kang, and S. Tonegawa, “Translational control by MAPK signaling in long-term synaptic plasticity and memory,” Cell, vol. 116, no. 3, pp. 467–479, 2004.
- J. Jaworski, S. Spangler, D. P. Seeburg, C. C. Hoogenraad, and M. Sheng, “Control of dendritic arborization by the phosphoinositide-3′-kinase- Akt-mammalian target of rapamycin pathway,” Journal of Neuroscience, vol. 25, no. 49, pp. 11300–11312, 2005.
- G. Krapivinsky, I. Medina, L. Krapivinsky, S. Gapon, and D. E. Clapham, “SynGAP-MUPP1-CaMKII synaptic complexes regulate p38 MAP kinase activity and NMDA receptor- dependent synaptic AMPA receptor potentiation,” Neuron, vol. 43, no. 4, pp. 563–574, 2004.
- L. Van Aelst and H. T. Cline, “Rho GTPases and activity-dependent dendrite development,” Current Opinion in Neurobiology, vol. 14, no. 3, pp. 297–304, 2004.
- L. Luo, T. K. Hensch, L. Ackerman, S. Barbel, L. Y. Jan, and Y. N. Jan, “Differential effects of the Rac GTPase on Purkinje cell axons and dendritic trunks and spines,” Nature, vol. 379, no. 6568, pp. 837–840, 1996.
- H. Zhang, D. J. Webb, H. Asmussen, S. Niu, and A. F. Horwitz, “A GIT1/PIX/Rac/PAK signaling module regulates spine morphogenesis and synapse formation through MLC,” Journal of Neuroscience, vol. 25, no. 13, pp. 3379–3388, 2005.
- K. A. Rauen, “HRAS and the Costello syndrome,” Clinical Genetics, vol. 71, no. 2, pp. 101–108, 2007.
- U. Gärtner, A. Alpár, J. Behrbohm, R. Heumann, and T. Arendt, “Enhanced Ras activity promotes spine formation in synRas mice neocortex,” NeuroReport, vol. 16, no. 2, pp. 149–152, 2005.
- T. Arendt, U. Gärtner, G. Seeger et al., “Neuronal activation of Ras regulates synaptic connectivity,” European Journal of Neuroscience, vol. 19, no. 11, pp. 2953–2966, 2004.
- T. Manabe, A. Aiba, A. Yamada et al., “Regulation of long-term potentiation by H-Ras through NMDA receptor phosphorylation,” Journal of Neuroscience, vol. 20, no. 7, pp. 2504–2511, 2000.
- S. A. Kushner, Y. Elgersma, G. G. Murphy et al., “Modulation of presynaptic plasticity and learning by the H-ras/extracellular signal-regulated kinase/synapsin I signaling pathway,” Journal of Neuroscience, vol. 25, no. 42, pp. 9721–9734, 2005.
- H. Yang and R. R. Mattingly, “The Ras-GRF1 exchange factor coordinates activation of H-Ras and Rac1 to control neuronal morphology,” Molecular Biology of the Cell, vol. 17, no. 5, pp. 2177–2189, 2006.
- M. K. Jones and J. H. Jackson, “Ras-GRF activates Ha-Ras, but not N-Ras or K-Ras 4B, protein in vivo,” Journal of Biological Chemistry, vol. 273, no. 3, pp. 1782–1787, 1998.
- W. Wei, S. S. Schreiber, M. Baudry, G. Tocco, and D. Broek, “Localization of the cellular expression pattern of cdc25(NEF) and ras in the juvenile rat brain,” Molecular Brain Research, vol. 19, no. 4, pp. 339–344, 1993.
- Z. Renata, G. Nerina, M.-L. Noa et al., “Ras-GRF, the activator of Ras, is expressed preferentially in mature neurons of the central nervous system,” Molecular Brain Research, vol. 48, no. 1, pp. 140–144, 1997.
- E. Sturani, A. Abbondio, P. Branduardi et al., “The Ras guanine nucleotide exchange factor CDC25Mm is present at the synaptic junction,” Experimental Cell Research, vol. 235, no. 1, pp. 117–123, 1997.
- G. Krapivinsky, L. Krapivinsky, Y. Manasian et al., “The NMDA receptor is coupled to the ERK pathway by a direct interaction between NR2B and RasGRF1,” Neuron, vol. 40, no. 4, pp. 775–784, 2003.
- R. R. Mattingly, “Phosphorylation of serine 916 of Ras-GRF1 contributes to the activation of exchange factor activity by muscarinic receptors,” Journal of Biological Chemistry, vol. 274, no. 52, pp. 37379–37384, 1999.
- H. Yang, D. Cooley, J. E. Legakis, Q. Ge, R. Andrade, and R. R. Mattingly, “Phosphorylation of the Ras-GRF1 exchange factor at Ser916/898 reveals activation of Ras signaling in the cerebral cortex,” Journal of Biological Chemistry, vol. 278, no. 15, pp. 13278–13285, 2003.
- R. R. Mattingly, V. Saini, and I. G. Macara, “Activation of the Ras-GRF/CDC25Mm exchange factor by lysophosphatidic acid,” Cellular Signalling, vol. 11, no. 8, pp. 603–610, 1999.
- K. P. Giese, E. Friedman, J.-B. Telliez et al., “Hippocampus-dependent learning and memory is impaired in mice lacking the Ras-guanine-nucleotide releasing factor 1 (Ras-GRF1),” Neuropharmacology, vol. 41, no. 6, pp. 791–800, 2001.
- R. D'Isa, S. J. Clapcote, V. Voikar et al., “Mice lacking ras-GRF1 show contextual fear conditioning but not spatial memory impairments: convergent evidence from two independently generated mouse mutant lines,” Frontiers in Behavioral Neuroscience, 2011.
- A. Fernández-Medarde, R. Barhoum, R. Riquelme et al., “RasGRF1 disruption causes retinal photoreception defects and associated transcriptomic alterations,” Journal of Neurochemistry, vol. 110, no. 2, pp. 641–652, 2009.
- P. G. Hysi, T. L. Young, D. A. MacKey et al., “A genome-wide association study for myopia and refractive error identifies a susceptibility locus at 15q25,” Nature Genetics, vol. 42, no. 10, pp. 902–905, 2010.
- R. Brambilla, N. Gnesutta, L. Minichiello et al., “A role for the Ras signalling pathway in synaptic transmission and long-term memory,” Nature, vol. 390, no. 6657, pp. 281–286, 1997.
- S. Li, X. Tian, D. M. Hartley, and L. A. Feig, “Distinct roles for Ras-guanine nucleotide-releasing factor 1 (Ras-GRF1) and Ras-GRF2 in the induction of long-term potentiation and long-term depression,” Journal of Neuroscience, vol. 26, no. 6, pp. 1721–1729, 2006.
- R. Tonini, S. Franceschetti, D. Parolaro et al., “Involvement of CDC25Mm/Ras-GRF1-dependent signaling in the control of neuronal excitability,” Molecular and Cellular Neuroscience, vol. 18, no. 6, pp. 691–701, 2001.
- A. Fernández-Medarde, A. Porteros, J. de las Rivas, A. Núñez, J. J. Fuster, and E. Santos, “Laser microdissection and microarray analysis of the hippocampus of Ras-GRF1 knockout mice reveals gene expression changes affecting signal transduction pathways related to memory and learning,” Neuroscience, vol. 146, no. 1, pp. 272–285, 2007.
- M. C. Janelsins, S. Kohli, S. G. Mohile, K. Usuki, T. A. Ahles, and G. R. Morrow, “An update on cancer- and chemotherapy-related cognitive dysfunction: current status,” Seminars in Oncology, vol. 38, no. 3, pp. 431–438, 2011.
- K. Masui, B. Gini, J. Wykosky et al., “A tale of two approaches: complementary mechanisms of cytotoxic and targeted therapy resistance may inform next-generation cancer treatments,” Carcinogenesis, vol. 34, pp. 725–738, 2013.
- J. M. Friedman, “Epidemiology of neurofibromatosis type 1,” American Journal of Medical Genetics, vol. 89, pp. 1–6, 1999.
- D. Arun and D. H. Gutmann, “Recent advances in neurofibromatosis type 1,” Current Opinion in Neurology, vol. 17, no. 2, pp. 101–105, 2004.
- T. M. Lynch and D. H. Gutmann, “Neurofibromatosis 1,” Neurologic Clinics, vol. 20, no. 3, pp. 841–865, 2002.
- K. Jett and J. M. Friedman, “Clinical and genetic aspects of neurofibromatosis 1,” Genetics in Medicine, vol. 12, no. 1, pp. 1–11, 2010.
- S. L. Carroll and N. Ratner, “How does the Schwann cell lineage form tumors in NF1?” Glia, vol. 56, no. 14, pp. 1590–1605, 2008.
- D. P. Huynh, T. Nechiporuk, and S. M. Pulstl, “Differential expression and tissue distribution of type I and type II neurofibromins during mouse fetal development,” Developmental Biology, vol. 161, no. 2, pp. 538–551, 1994.
- J. E. DeClue, B. D. Cohen, and D. R. Lowy, “Identification and characterization of the neurofibromatosis type 1 protein product,” Proceedings of the National Academy of Sciences of the United States of America, vol. 88, no. 22, pp. 9914–9918, 1991.
- M. M. Feldkamp, L. Angelov, and A. Guha, “Neurofibromatosis type 1 peripheral nerve tumors: aberrant activation of the Ras pathway,” Surgical Neurology, vol. 51, no. 2, pp. 211–218, 1999.
- N. Lau, M. M. Feldkamp, L. Roncari et al., “Loss of neurofibromin is associated with activation of RAS/MAPK and PI3-K/AKT signaling in a neurofibromatosis 1 astrocytoma,” Journal of Neuropathology and Experimental Neurology, vol. 59, no. 9, pp. 759–767, 2000.
- R. R. Mattingly, J. M. Kraniak, J. T. Dilworth et al., “The mitogen-activated protein kinase/extracellular signal-regulated kinase kinase inhibitor PD184352 (CI-1040) selectively induces apoptosis in malignant schwannoma cell lines,” Journal of Pharmacology and Experimental Therapeutics, vol. 316, no. 1, pp. 456–465, 2006.
- J. M. Kraniak, D. Sun, R. R. Mattingly, J. J. Reiners Jr., and M. A. Tainsky, “The role of neurofibromin in N-Ras mediated AP-1 regulation in malignant peripheral nerve sheath tumors,” Molecular and Cellular Biochemistry, vol. 344, no. 1-2, pp. 267–276, 2010.
- D. Sun, R. Haddad, J. M. Kraniak, S. D. Horne, and M. A. Tainsky, “RAS/MEK-independent gene expression reveals BMP2-related malignant phenotypes in the Nf1-deficient MPNST,” Molecular Cancer Research, vol. 11, no. 6, pp. 616–627, 2013.
- J. T. Dilworth, J. M. Kraniak, J. W. Wojtkowiak et al., “Molecular targets for emerging anti-tumor therapies for neurofibromatosis type 1,” Biochemical Pharmacology, vol. 72, no. 11, pp. 1485–1492, 2006.
- M. T. Acosta, G. A. Gioia, and A. J. Silva, “Neurofibromatosis type 1: new insights into neurocognitive issues,” Current Neurology and Neuroscience Reports, vol. 6, no. 2, pp. 136–143, 2006.
- R. M. Costa, N. B. Federov, J. H. Kogan et al., “Mechanism for the learning deficits in a mouse model of neurofibromatosis type 1,” Nature, vol. 415, no. 6871, pp. 526–530, 2002.
- K.-J. Cho, M. M. Hill, S. Chigurupati, G. Du, R. G. Parton, and J. F. Hancock, “Therapeutic levels of the hydroxmethylglutaryl-coenzyme A reductase inhibitor lovastatin activate ras signaling via phospholipase D2,” Molecular and Cellular Biology, vol. 31, no. 6, pp. 1110–1120, 2011.
- S. A. Holstein, H. R. Knapp, G. H. Clamon, D. J. Murry, and R. J. Hohl, “Pharmacodynamic effects of high dose lovastatin in subjects with advanced malignancies,” Cancer Chemotherapy and Pharmacology, vol. 57, no. 2, pp. 155–164, 2006.
- W. Li, Y. Cui, S. A. Kushner et al., “The HMG-CoA reductase inhibitor lovastatin reverses the learning and attention deficits in a mouse model of Neurofibromatosis Type 1,” Current Biology, vol. 15, no. 21, pp. 1961–1967, 2005.
- C. Chabernaud, M. Mennes, P. G. Kardel et al., “Lovastatin regulates brain spontaneous low-frequency brain activity in Neurofibromatosis type 1,” Neuroscience Letters, vol. 515, no. 1, pp. 28–33, 2012.
- M. O. Bergo, B. J. Gavino, C. Hong et al., “Inactivation of Icmt inhibits transformation by oncogenic K-Ras and B-Raf,” Journal of Clinical Investigation, vol. 113, no. 4, pp. 539–550, 2004.
- M. O. Bergo, G. K. Leung, P. Ambroziak et al., “Isoprenylcysteine Carboxyl Methyltransferase Deficiency in Mice,” Journal of Biological Chemistry, vol. 276, no. 8, pp. 5841–5845, 2001.
- M. O. Bergo, G. K. Leung, P. Ambroziak, J. C. Otto, P. J. Casey, and S. G. Young, “Targeted inactivation of the isoprenyleysteine carboxyl methyltransferase gene causes mislocalization of K-Ras in mammalian cells,” Journal of Biological Chemistry, vol. 275, no. 23, pp. 17605–17610, 2000.
- S. Clarke and F. Tamanoi, “Fighting cancer by disrupting C-terminal methylation of signaling proteins,” Journal of Clinical Investigation, vol. 113, no. 4, pp. 513–515, 2004.
- D. Michaelson, W. Ali, V. K. Chiu et al., “Postprenylation CAAX processing is required for proper localization of ras but not Rho GTPases,” Molecular Biology of the Cell, vol. 16, no. 4, pp. 1606–1616, 2005.
- A. M. Winter-Vann, R. A. Baron, W. Wong et al., “A small-molecule inhibitor of isoprenylcysteine carboxyl methyltransferase with antitumor activity in cancer cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 12, pp. 4336–4341, 2005.
- M. Wang, W. Tan, J. Zhou et al., “A small molecule inhibitor of isoprenylcysteine carboxymethyltransferase induces autophagic cell death in PC3 prostate cancer cells,” Journal of Biological Chemistry, vol. 283, no. 27, pp. 18678–18684, 2008.
- A.-M. R. Dechert, J. P. MacNamara, S. R. Breevoort et al., “Modulation of the inhibitor properties of dipeptidyl (acyloxy)methyl ketones toward the CaaX proteases,” Bioorganic and Medicinal Chemistry, vol. 18, no. 17, pp. 6230–6237, 2010.
- J. F. Hancock, A. I. Magee, J. E. Childs, and C. J. Marshall, “All ras proteins are polyisoprenylated but only some are palmitoylated,” Cell, vol. 57, no. 7, pp. 1167–1177, 1989.
- M. R. Philips, “Compartmentalized signalling of Ras,” Biochemical Society Transactions, vol. 33, no. 4, pp. 657–661, 2005.
- K.-J. Cho, R. Kasai, J.-H. Park et al., “Raf inhibitors target Ras spatiotemporal dynamics,” Current Biology, vol. 22, no. 11, pp. 945–955, 2012.
- D. Marciano, G. Ben-Baruch, M. Marom, Y. Egozi, R. Haklai, and Y. Kloog, “Farnesyl derivatives of rigid carboxylic acids-inhibitors of ras-dependent cell growth,” Journal of Medicinal Chemistry, vol. 38, no. 8, pp. 1267–1272, 1995.
- N. Boufaied, M.-A. Wioland, P. Falardeau, and H. Gourdeau, “TLN-4601, a novel anticancer agent, inhibits Ras signaling post Ras prenylation and before MEK activation,” Anti-Cancer Drugs, vol. 21, no. 5, pp. 543–552, 2010.
- G. J. Riely, M. L. Johnson, C. Medina et al., “A phase II trial of salirasib in patients with lung adenocarcinomas with KRAS mutations,” Journal of Thoracic Oncology, vol. 6, no. 8, pp. 1435–1437, 2011.
- W. P. Mason, K. Belanger, G. Nicholas et al., “A phase II study of the Ras-MAPK signaling pathway inhibitor TLN-4601 in patients with glioblastoma at first progression,” Journal of Neuro-Oncology, vol. 107, no. 2, pp. 343–349, 2012.
- D. Laheru, P. Shah, N. V. Rajeshkumar et al., “Integrated preclinical and clinical development of S-trans, trans-farnesylthiosalicylic acid (FTS, Salirasib) in pancreatic cancer,” Investigational New Drugs, vol. 30, no. 6, pp. 2391–2399, 2012.
- E. H. Chang, Z. Yu, K. Shinozuka, G. Zon, W. D. Wilson, and A. Strekowska, “Comparative inhibition of ras p21 protein synthesis with phosphorus-modified antisense oligonucleotides,” Anti-Cancer Drug Design, vol. 4, no. 3, pp. 221–232, 1989.
- Y. Daaka and E. Wickstrom, “Target dependence of antisense oligodeoxynucleotide inhibition of c-Ha-ras p21 expression and focus formation in T24-transformed NIH3T3 cells,” Oncogene Research, vol. 5, no. 4, pp. 267–275, 1990.
- C. Hall, S. M. Troutman, D. K. Price, W. D. Figg, and M. H. Kang, “Bcl-2 family of proteins as therapeutic targets in genitourinary neoplasms,” Clinical Genitourinary Cancer, vol. 11, pp. 10–19, 2013.
- F. De Nigris, M. L. Balestrieri, and C. Napoli, “Targeting c-Myc, Ras and IGF cascade to treat cancer and vascular disorders,” Cell Cycle, vol. 5, no. 15, pp. 1621–1628, 2006.
- S. Cogoi and L. E. Xodo, “G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription,” Nucleic Acids Research, vol. 34, no. 9, pp. 2536–2549, 2006.
- G. Biffi, D. Tannahill, J. McCafferty, and S. Balasubramanian, “Quantitative visualization of DNA G-quadruplex structures in human cells,” Nature Chemistry, vol. 5, pp. 182–186, 2013.
- D. Castillo-Gonzalez, G. Perez-Machado, A. Guedin, J. L. Mergny, and M. A. Cabrera-Perez, “FDA-approved drugs selected using virtual screening bind specifically to G-quadruplex DNA,” Current Pharmaceutical Design, vol. 19, pp. 2164–2173, 2013.
- J. Dash, Z. A. E. Waller, G. D. Pantoş, and S. Balasubramanian, “Synthesis and binding studies of novel diethynyl-pyridine amides with genomic promoter DNA G-quadruplexes,” Chemistry, vol. 17, no. 16, pp. 4571–4581, 2011.
- S. Cogoi, A. E. Shchekotikhin, A. Membrino, Y. B. Sinkevich, and L. E. Xodo, “Guanidino anthrathiophenediones as G-quadruplex binders: uptake, intracellular localization, and anti-Harvey-Ras gene activity in bladder cancer cells,” Journal of Medicinal Chemistry, vol. 56, pp. 2764–2778, 2013.
- M. L. Bochman, K. Paeschke, and V. A. Zakian, “DNA secondary structures: stability and function of G-quadruplex structures,” Nature Reviews Genetics, vol. 13, pp. 770–780, 2012.
- S. M. Johnson, H. Grosshans, J. Shingara et al., “RAS is regulated by the let-7 microRNA family,” Cell, vol. 120, no. 5, pp. 635–647, 2005.
- F. Yu, H. Yao, P. Zhu et al., “let-7 regulates self renewal and tumorigenicity of breast cancer cells,” Cell, vol. 131, no. 6, pp. 1109–1123, 2007.
- L. J. Mekenkamp, J. Tol, J. R. Dijkstra et al., et al., “Beyond KRAS mutation status: influence of KRAS copy number status and microRNAs on clinical outcome to cetuximab in metastatic colorectal cancer patients,” BMC Cancer, vol. 12, article 292, 2012.
- M. Y. W. Wong, Y. Yu, W. R. Walsh, and J.-L. Yang, “microRNA-34 family and treatment of cancers with mutant or wild-type p53 (Review),” International Journal of Oncology, vol. 38, no. 5, pp. 1189–1195, 2011.
- C. J. Wright and P. L. McCormack, “Trametinib: first global approval,” Drugs, vol. 73, pp. 1245–1254, 2013.
- A. Akinleye, M. Furqan, N. Mukhi, P. Ravella, and D. Liu, “MEK and the inhibitors: from bench to bedside,” Journal of Hematology & Oncology, vol. 6, article 27, 2013.
- P. A. Ascierto, D. Schadendorf, C. Berking et al., et al., “MEK162 for patients with advanced melanoma harbouring NRAS or Val600 BRAF mutations: a non-randomised, open-label phase 2 study,” The Lancet Oncology, vol. 14, pp. 249–256, 2013.
- K. R. Stengel and Y. Zheng, “Essential role of Cdc42 in Ras-induced transformation revealed by gene targeting,” PLoS ONE, vol. 7, Article ID e37317, 2012.
- N. Mitin, K. L. Rossman, and C. J. Der, “Signaling interplay in ras superfamily function,” Current Biology, vol. 15, no. 14, pp. R563–R574, 2005.
- A. V. Patel, D. Eaves, W. J. Jessen et al., et al., “Ras-driven transcriptome analysis identifies aurora kinase A as a potential malignant peripheral nerve sheath tumor therapeutic target,” Clinical Cancer Research, vol. 18, pp. 5020–5030, 2012.
- S. Eser, N. Reiff, M. Messer et al., et al., “Selective requirement of PI3K/PDK1 signaling for Kras oncogene-driven pancreatic cell plasticity and cancer,” Cancer Cell, vol. 23, pp. 406–420, 2013.
- H. Y. Chow, A. M. Jubb, J. N. Koch et al., et al., “p21-Activated kinase 1 is required for efficient tumor formation and progression in a Ras-mediated skin cancer model,” Cancer Research, vol. 72, pp. 5966–5975, 2012.
- R. E. Menard and R. R. Mattingly, “Cell surface receptors activate p21-activated kinase 1 via multiple Ras and PI3-kinase-dependent pathways,” Cellular Signalling, vol. 15, no. 12, pp. 1099–1109, 2003.
- Q. Li and R. R. Mattingly, “Restoration of E-cadherin cell-cell junctions requires both expression of E-cadherin and suppression of ERK MAP kinase activation in ras-transformed breast epithelial cells,” Neoplasia, vol. 10, no. 12, pp. 1444–1458, 2008.
- Q. Li, A. B. Chow, and R. R. Mattingly, “Three-dimensional overlay culture models of human breast cancer reveal a critical sensitivity to mitogen-activated protein kinase kinase inhibitors,” Journal of Pharmacology and Experimental Therapeutics, vol. 332, no. 3, pp. 821–828, 2010.
- C. Posch, H. Moslehi, L. Feeney et al., et al., “Combined targeting of MEK and PI3K/mTOR effector pathways is necessary to effectively inhibit NRAS mutant melanoma in vitro and in vivo,” Proceedings of the National Academy of Sciences of the United States of America, vol. 110, pp. 4015–4020, 2013.
- K. T. Flaherty, I. Puzanov, K. B. Kim et al., “Inhibition of mutated, activated BRAF in metastatic melanoma,” The New England Journal of Medicine, vol. 363, no. 9, pp. 809–819, 2010.
- G. Bollag, P. Hirth, J. Tsai et al., “Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma,” Nature, vol. 467, no. 7315, pp. 596–599, 2010.
- P. B. Chapman, A. Hauschild, C. Robert et al., “Improved survival with vemurafenib in melanoma with BRAF V600E mutation,” The New England Journal of Medicine, vol. 364, no. 26, pp. 2507–2516, 2011.
- G. S. Falchook, G. V. Long, R. Kurzrock et al., et al., “Dabrafenib in patients with melanoma, untreated brain metastases, and other solid tumours: a phase 1 dose-escalation trial,” The Lancet, vol. 379, pp. 1893–1901, 2012.
- K. Young, A. Minchom, and J. Larkin, “BRIM-1, -2 and -3 trials: improved survival with vemurafenib in metastatic melanoma patients with a BRAF(V600E) mutation,” Future Oncology, vol. 8, pp. 499–507, 2012.
- J. A. Sosman, K. B. Kim, L. Schuchter et al., “Survival in BRAF V600-mutant advanced melanoma treated with vemurafenib,” The New England Journal of Medicine, vol. 366, no. 8, pp. 707–714, 2012.
- C. M. Johannessen, J. S. Boehm, S. Y. Kim et al., “COT drives resistance to RAF inhibition through MAP kinase pathway reactivation,” Nature, vol. 468, no. 7326, pp. 968–972, 2010.
- R. Nazarian, H. Shi, Q. Wang et al., “Melanomas acquire resistance to B-RAF(V600E) inhibition by RTK or N-RAS upregulation,” Nature, vol. 468, no. 7326, pp. 973–977, 2010.
- F. Su, A. Viros, C. Milagre et al., “RAS mutations in cutaneous squamous-cell carcinomas in patients treated with BRAF inhibitors,” The New England Journal of Medicine, vol. 366, no. 3, pp. 207–215, 2012.
- D. Beck, H. Niessner, K. S. Smalley et al., et al., “Vemurafenib potently induces endoplasmic reticulum stress-mediated apoptosis in BRAFV600E melanoma cells,” Science Signaling, vol. 6, article ra7, 2013.
- K. Trunzer, A. C. Pavlick, L. Schuchter et al., et al., “Pharmacodynamic effects and mechanisms of resistance to vemurafenib in patients with metastatic melanoma,” Journal of Clinical Oncology, vol. 31, pp. 1767–1774, 2013.
- P. A. Ascierto, E. Simeone, D. Giannarelli, A. M. Grimaldi, A. Romano, and N. Mozzillo, “Sequencing of BRAF inhibitors and ipilimumab in patients with metastatic melanoma: a possible algorithm for clinical use,” Journal of Translational Medicine, vol. 10, article 107, 2012.
- M. S. Carlino, K. Gowrishankar, C. A. Saunders et al., et al., “Antiproliferative effects of continued mitogen-activated protein kinase pathway inhibition following acquired resistance to BRAF and/or MEK inhibition in melanoma,” Molecular Cancer Therapeutics, vol. 12, pp. 1332–1342, 2013.
- R. Antony, C. M. Emery, A. M. Sawyer, and L. A. Garraway, “C-RAF mutations confer resistance to RAF inhibitors,” Cancer Research, vol. 73, pp. 4840–4851, 2013.