Molecular Phylogeny of Suid Herpesvirus 1

Table 3

Substitution models, reconstruction of phylogenetic tree and programs used for each group of sequences studied in this work.

Gene	Type	Evolutionary models	Phylogeny	Software
ul44	Complete	GTR Γ4+I	Bayesian Inference	Mr.Bayes^a
	Partial
us6	Complete	GTR	Maximum Likelihood	Seaview^b
us7	Complete	HKY+Γ	Maximum Likelihood	Seaview
	Partial
us8	Complete	GTR+Γ	Maximum Likelihood	Seaview
	Partial	HKY	Maximum Likelihood	Seaview
us9	Complete	F81	Neighbor Joining	Seaview
ul14	Complete	F81	Neighbor Joining	Seaview
ul49.5	Complete	TrN	Neighbor Joining	Seaview

aHuelsenbeck e Ronquist, 2001 ^bGouy et al., 2010 [20].