925278.fig.003a
(a)
925278.fig.003b
(b)
925278.fig.003c
(c)
925278.fig.003d
(d)
Figure 3: Evolution of trajectory #18 (a), #32 (b), #35 (c), and #25 (d). Top graphs: formation of the helical regions H1 (green), H2 (blue), and H3 (magenta) into helices and evolution of the energy level (red). The blue box of (d) indicates that a lower temperature criterion was used for that part of the simulation. All lines are smoothed by a Gaussian of width 𝜎 = 0 . 1 (reproduced from [38]).