Journal of Biomedicine and Biotechnology
Volume 2008 (2008), Article ID 856314, 8 pages
doi:10.1155/2008/856314
Research Article
Focal Point Theory Models for Dissecting Dynamic Duality Problems of Microbial Infections
1Childrens Hospital Los Angeles, University of Southern California, Los Angeles 90027, CA, USA
2HRL Laboratories, LLC., Malibu 90265, CA, USA
Received 31 August 2007; Accepted 19 December 2007
Academic Editor: Daniel Howard
Copyright © 2008 S.-H. Huang et al. This is an open access article distributed under the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Linked References
- S.-H. Huang, T. Triche, and A. Jong, “Infectomics: genomics and proteomics of microbial infections,” Functional & Integrative Genomics, vol. 1, no. 6, pp. 331–344, 2002. View at Publisher · View at Google Scholar · View at PubMed
- S.-H. Huang, X. Wang, and A. Jong, “The evolving role of infectomics in drug discovery,” Expert Opinion on Drug Discovery, vol. 2, no. 7, pp. 961–975, 2007. View at Publisher · View at Google Scholar
- M. J. Roossinck, “Symbiosis versus competition in plant virus evolution,” Nature Reviews Microbiology, vol. 3, no. 12, pp. 917–924, 2005. View at Publisher · View at Google Scholar · View at PubMed
- G. G. Dimijian, “Evolving together: the biology of symbiosis,” Baylor University Medical Center Proceedings, vol. 13, no. 3, pp. 217–226, 2000.
- L. Smolin, Three Roads to Quantum Gravity, Basic Books, New York, NY, USA, 2001.
- J. Lederberg, “Infectious history,” Science, vol. 288, no. 5464, pp. 287–293, 2000. View at Publisher · View at Google Scholar
- J. Lederberg, “The future of infectious diseases,” Journal of Urban Health, vol. 75, no. 3, pp. 463–470, 1998. View at Publisher · View at Google Scholar · View at PubMed
- H. Brüssow, C. Canchaya, and W.-D. Hardt, “Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion,” Microbiology and Molecular Biology Reviews, vol. 68, no. 3, pp. 560–602, 2004. View at Publisher · View at Google Scholar · View at PubMed
- M. E. J. Woolhouse, J. P. Webster, E. Domingo, B. Charlesworth, and B. R. Levin, “Biological and biomedical implications of the co-evolution of pathogens and their hosts,” Nature Genetics, vol. 32, no. 4, pp. 569–577, 2002. View at Publisher · View at Google Scholar · View at PubMed
- A. Casadevall and L.-A. Pirofski, “Host-pathogen interactions: basic concepts of microbial commensalism, colonization, infection, and disease,” Infection and Immunity, vol. 68, no. 12, pp. 6511–6518, 2000. View at Publisher · View at Google Scholar
- T. C. Schelling, The Strategy of Conflict, Harvard University Press, Cambridge, Mass, USA, 1960.
- J. Mehta, C. Starmer, and R. Sugden, “Focal points in pure coordination games: an experimental investigation,” Theory and Decision, vol. 36, no. 2, pp. 163–185, 1994. View at Publisher · View at Google Scholar
- R. E. Ley, D. A. Peterson, and J. I. Gordon, “Ecological and evolutionary forces shaping microbial diversity in the human intestine,” Cell, vol. 124, no. 4, pp. 837–848, 2006. View at Publisher · View at Google Scholar · View at PubMed
- S. Falkow, “Is persistent bacterial infection good for your health?,” Cell, vol. 124, no. 4, pp. 699–702, 2006. View at Publisher · View at Google Scholar · View at PubMed
- D. Kuklinska and M. Kilian, “Relative proportions of Haemophilus species in the throat of healthy children and adults,” European Journal of Clinical Microbiology & Infectious Diseases, vol. 3, no. 3, pp. 249–252, 1984. View at Publisher · View at Google Scholar
- K. Binmore and L. Samuelson, “The evolution of focal points,” Games and Economic Behavior, vol. 55, no. 1, pp. 21–42, 2006. View at Publisher · View at Google Scholar · View at MathSciNet
- R. Sugden and I. E. Zamarrón, “Finding the key: the riddle of focal points,” Journal of Economic Psychology, vol. 27, no. 5, pp. 609–621, 2006. View at Publisher · View at Google Scholar
- R. A. Welch, V. Burland, and G. Plunkett III, et al., “Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 26, pp. 17020–17024, 2002. View at Publisher · View at Google Scholar · View at PubMed
- G. Pósfai, G. Plunkett III, and T. Fehér, et al., “Emergent properties of reduced-genome Escherichia coli,” Science, vol. 312, no. 5776, pp. 1044–1046, 2006. View at Publisher · View at Google Scholar · View at PubMed
- H. Brüssow, “Phage therapy: the Escherichia coli experience,” Microbiology, vol. 151, no. 7, pp. 2133–2140, 2005. View at Publisher · View at Google Scholar · View at PubMed
- M. Ohnishi, K. Kurokawa, and T. Hayashi, “Diversification of Escherichia coli genomes: are bacteriophages the major contributors?,” Trends in Microbiology, vol. 9, no. 10, pp. 481–485, 2001. View at Publisher · View at Google Scholar
- D. A. Relman, “New technologies, human-microbe interactions, and the search for previously unrecognized pathogens,” Journal of Infectious Diseases, vol. 186, supplement 2, pp. S254–S258, 2002. View at Publisher · View at Google Scholar · View at PubMed
- J. Hacker and E. Carniel, “Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes,” EMBO Reports, vol. 2, no. 5, pp. 376–381, 2001. View at Publisher · View at Google Scholar · View at PubMed
- P. J. Sansonetti, “War and peace at mucosal surfaces,” Nature Reviews Immunology, vol. 4, no. 12, pp. 953–964, 2004. View at Publisher · View at Google Scholar · View at PubMed
- E. Rosenberg, O. Koren, L. Reshef, R. Efrony, and I. Zilber-Rosenberg, “The role of microorganisms in coral health, disease and evolution,” Nature Reviews Microbiology, vol. 5, no. 5, pp. 355–362, 2007. View at Publisher · View at Google Scholar · View at PubMed
- M. E. Bianchi, “DAMPs, PAMPs and alarmins: all we need to know about danger,” Journal of Leukocyte Biology, vol. 81, no. 1, pp. 1–5, 2007. View at Publisher · View at Google Scholar · View at PubMed
- S.-H. Huang, “Infectomics-based new theory for dissecting the pathogenesis, prevention and therapeutics of microbial infections,” in Teda-Watson International forum on Biotechnology and Biomedicine, vol. 4, pp. 73–74, Tianjin, China, 2005.
- S.-H. Huang, Y.-H. Chen, and G. Kong, et al., “A novel genetic island of meningitic Escherichia coli K1 containing the ibeA invasion gene (GimA): functional annotation and carbon-source-regulated invasion of human brain microvascular endothelial cells,” Functional & Integrative Genomics, vol. 1, no. 5, pp. 312–322, 2001. View at Publisher · View at Google Scholar · View at PubMed
- J. Hejnova, U. Dobrindt, and R. Nemcova, et al., “Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83:K24:H31),” Microbiology, vol. 151, no. 2, pp. 385–398, 2005. View at Publisher · View at Google Scholar · View at PubMed
- S. A. Joyce and D. J. Clarke, “A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation,” Molecular Microbiology, vol. 47, no. 5, pp. 1445–1457, 2003. View at Publisher · View at Google Scholar
- G. Silvestri, “Naturally SIV-infected sooty mangabeys: are we closer to understanding why they do not develop AIDS?,” Journal of Medical Primatology, vol. 34, no. 5-6, pp. 243–252, 2005. View at Publisher · View at Google Scholar · View at PubMed
- B. A. Webb, M. R. Strand, and S. E. Dickey, et al., “Polydnavirus genomes reflect their dual roles as mutualists and pathogens,” Virology, vol. 347, no. 1, pp. 160–174, 2006. View at Publisher · View at Google Scholar · View at PubMed
- K. S. Kobayashi and R. A. Flavell, “Shielding the double-edged sword: negative regulation of the innate immune system,” Journal of Leukocyte Biology, vol. 75, no. 3, pp. 428–433, 2004. View at Publisher · View at Google Scholar · View at PubMed
- J. Demengeot, S. Zelenay, M. F. Moraes-Fontes, Í. Caramalho, and A. Coutinho, “Regulatory T cells in microbial infection,” Springer Seminars in Immunopathology, vol. 28, no. 1, pp. 41–50, 2006. View at Publisher · View at Google Scholar · View at PubMed
- R. Lucattini, V. A. Likić, and T. Lithgow, “Bacterial proteins predisposed for targeting to mitochondria,” Molecular Biology and Evolution, vol. 21, no. 4, pp. 652–658, 2004. View at Publisher · View at Google Scholar · View at PubMed
- T. Uchiumi, T. Ohwada, and M. Itakura, et al., “Expression islands clustered on the symbiosis island of the Mesorhizobium loti genome,” Journal of Bacteriology, vol. 186, no. 8, pp. 2439–2448, 2004. View at Publisher · View at Google Scholar
- M. C. W. Janssen, “Rationalizing focal points,” Theory and Decision, vol. 50, no. 2, pp. 119–148, 2001. View at Publisher · View at Google Scholar
- P. T. Leeson, C. J. Coyne, and P. J. Boettke, “Converting social conflict: focal points and the evolution of cooperation,” The Review of Austrian Economics, vol. 19, no. 2-3, pp. 137–147, 2006. View at Publisher · View at Google Scholar
- L. C. Gao, Principles of Systemics, Science Press, Beijing, China, 2005.
- A. M. Colman, “Thomas C. Schelling's psychological decision theory: introduction to a special issue,” Journal of Economic Psychology, vol. 27, no. 5, pp. 603–608, 2006. View at Publisher · View at Google Scholar
- D. E. Yirrell, E. Wright, and L. A. Shafer, et al., “Association between active GB virus-C (hepatitis G) infection and HIV-1 disease in Uganda,” International Journal of STD & AIDS, vol. 18, no. 4, pp. 244–249, 2007. View at Publisher · View at Google Scholar · View at PubMed
- T. N. Baral, S. Magez, and B. Stijlemans, et al., “Experimental therapy of African trypanosomiasis with a nanobody-conjugated human trypanolytic factor,” Nature Medicine, vol. 12, no. 5, pp. 580–584, 2006. View at Publisher · View at Google Scholar · View at PubMed