]>Crystal Structural and Functional Analysis of the Putative Dipeptidase from <i>Pyrococcus horikoshii</i> OT3 : Table 6
Table 6: Comparison of hydrophobic interaction due to dimer formation of A and B subunits for Ph dpd, Zn-Ph dpd, and Zn-Pfprol.
PhdpdZn-PhdpdZn-Pfprol Δ ( = Ph dpd-Zn-Phdpd) Δ ( = Ph dpd-Zn-Pfprol)
Δ A S A n p = ( m o n o m e r ∗ − d i m e r ) 139623412263 − 945 − 867
Δ A S A p = ( m o n o m e r ∗ − d i m e r ) 91410671070 − 153 − 156
Total buried area (Å2)231034083333
Δ 𝐺 H P (kJ/mol)191333320 − 142 − 129
∗ Monomer means the summation of ASA of A- and B-subunits.
A S A n p and A S A p represent accessible surface area of nonpolar (C and S) atoms and polar (N and O) atoms, respectively.
The ASA values were calculated using software [20]. The unit of the ASA value is Å2 . Δ 𝐺 H P was calculated using (1).