Clustering of Mycobacterium tuberculosis Cases in Acapulco: Spoligotyping and Risk Factors
Table 1
Acapulco patterns of Mycobacterium tuberculosis spoligotypes.
SIT
Spoligotyping pattern
%
Clade
19
70
26.2
EAI2-Manila
8
31
11.6
EAI-3
53
22
8.2
T-1
42
15
5.6
LAM-9
342
8
3.0
EAI-5
34
5
1.9
S
54
4
1.5
MANU-2
47
4
1.5
H-1
398
4
1.5
LAM-9
892
4
1.5
EAI-5
20
4
1.5
LAM-1
New
4
1.5
MX-1
New
4
1.5
MX-2
100
3
1.1
MANU-1
52
3
1.1
T-2
1193
3
1.1
MANU-1
New
2
0.7
MX-3
50
2
0.7
H-3
236
2
0.7
EAI-5
46
2
0.7
U
880
2
0.7
T-1
1224
2
0.7
L1M-3
92
2
0.7
X-3
287
2
0.7
EAI-2
New
2
0.7
MX-4
2
2
0.7
H-2
New
1
0.4
MX-5
51
1
0.4
T-1
New
1
0.4
MX-6
New
1
0.4
MX-7
New
1
0.4
MX-8
New
1
0.4
MX-9
New
1
0.4
MX-10
291
1
0.4
T-1
60
1
0.4
LAM-4
95
1
0.4
LAM-6
New
1
0.4
MX-11
New
1
0.4
MX-12
118
1
0.4
T-2
New
1
0.4
MX-13
New
1
0.4
MX-14
New
1
0.4
MX-15
81
1
0.4
LAM-9
New
1
0.4
MX-16
New
1
0.4
MX-17
33
1
0.4
LAM-3
211
1
0.4
LAM-3
New
1
0.4
MX-18
New
1
0.4
MX-19
New
1
0.4
MX-20
New
1
0.4
MX-21
New
1
0.4
MX-22
New
1
0.4
MX-23
91
1
0.4
X-3 Variant 1
New
1
0.4
MX-24
New
1
0.4
MX-25
New
1
0.4
MX-26
New
1
0.4
MX-27
894
1
0.4
EAI-1
New
1
0.4
MX-28
New
1
0.4
MX-29
New
1
0.4
MX-30
New
1
0.4
MX-31
New
1
0.4
MX-32
17
1
0.4
LAM-2
New
1
0.4
MX-33
New
1
0.4
MX-34
New
1
0.4
MX-35
New
1
0.4
MX-36
778
1
0.4
Bovis 1
New
1
0.4
MX-37
756
1
0.4
EAI-2
New
1
0.4
MX-38
New
1
0.4
MX-39
New
1
0.4
MX-40
New
1
0.4
MX-41
New
1
0.4
MX-42
New
1
0.4
MX-43
New
1
0.4
MX-44
New
1
0.4
MX-45
New
1
0.4
MX-46
New
1
0.4
MX-47
New
1
0.4
MX-48
New
1
0.4
MX-49
New
1
0.4
MX-50
Total
267
100
SIT, designation of the spoligotype in the international database. Spoligotyping patterns, binary description: (■) hybridization and (□) no hybridization. , number of strains; clade, defined mainly as described [4, 5]: EAI-2/Manila: East African Indian 2/Manila, T (ill-defined T cluster), LAM: Latin American and Mediterranean, S: S clade, MANU: Manu family, H: Haarlem, U: Undesignated, X: X cluster, Bovis. New clusters designated as MX (Mexican).
