Table 3: Alignment of VP1 amino acid (200–225) sequences from different EV71 subgenotypes and CVA16.

Strains EV71 subgenotype
or CVA16
Sequences

BrCr A QWFYDGYPTFGEHKQEKDLEYGAC
238/TW66 B1 QWFYDGYPTFGEHKQEKDLEYGAC
7423/CT/87 B2 QWFYDGYPTFGEHKQEKDLEYGAC
EV71/SAR/SHA66 B3 QWFYDGYPTFGEHKQEKDLEYGAC
EV71/9/97/SHA89 B4 QWFYDGYPTFGEHKQEKDLEYGAC
N2838-TW-03B5 QWFYDGYPTFGEHKQEKDLEYGAC
1M/AUS/12/00 C1 QWFYDGYPTFGEHKQEKDLEYGAC
TW/2086/98 C2 QWFYDGYPTFGEHKQEKDLEYGAC
Kor/EV71/10 C3 QWFYDGYPTFGEHKQEKDLEYGAC
N3340-TW-02 C4 QWFYDGYPTFGEHKQEKDLEYGAC
EV71 E59 B4 QWFYDGYPTFGEHKQEKDLEYGAC
Tainan/5079/98 CVA16 QWFYDGYPTFGEHLQANDLDYGQC