Model for Vaccine Design by Prediction of B-Epitopes of IEDB Given Perturbations in Peptide Sequence, In Vivo Process, Experimental Techniques, and Source or Host Organisms
Table 2
Average values and count of input-output cases for different organisms, process, and techniques.
Source organism (so)
*
Homo sapiens
38920
39274
2.685
Plasmodium falciparum
10669
9446
2.704
Hepatitis C virus
9935
10239
2.683
Bos taurus
5671
5780
2.690
Canine parvovirus
5655
5637
2.693
Foot-mouth disease virus
4062
4176
2.676
Triticum aestivum
3769
3887
2.703
Bacillus anthracis
3602
3600
2.699
Human papillomavirus
3316
3414
2.693
Human herpesvirus
3026
3132
2.684
Gallus gallus
2850
2829
2.689
Arachis hypogaea
2648
2670
2.687
Mycobacterium tuberculosis
2637
2593
2.688
Clostridium botulinum
2588
2722
2.685
SARS coronavirus
2550
2704
2.686
Mus musculus
2334
2287
2.682
Hepatitis B virus
2007
2066
2.680
Helicobacter pylori
1958
1796
2.695
Hevea brasiliensis
1938
1958
2.697
Hepatitis E virus
1928
1941
2.685
Shigella flexneri
1878
1701
2.699
Dengue virus 2
1767
1828
2.679
Staphylococcus aureus
1757
1661
2.694
Treponema pallidum
1739
1755
2.691
Escherichia coli
1721
1678
2.689
Murine hepatitis virus
1575
1603
2.692
Haemophilus influenzae
1545
1587
2.695
Streptococcus mutans
1523
1537
2.697
Puumala virus (strain)
1505
1574
2.689
Chlamydia trachomatis
1402
1546
2.704
Human respiratory virus
1347
1398
2.682
Borrelia burgdorferi
1228
1237
2.698
Hepatitis delta virus
1182
1199
2.690
Streptococcus pyogenes
1181
1251
2.697
Porphyromonas gingivalis
1143
1085
2.688
Human enterovirus
1106
1132
2.689
Influenza A virus
1085
1086
2.687
Mycoplasma hyopneumoniae
1044
1024
2.695
Rattus norvegicus
1025
1039
2.689
Bordetella pertussis
1011
960
2.685
Human T-lymphotropic virus
996
1031
2.680
Anaplasma marginale
977
857
2.707
Measles virus strain
804
810
2.688
Fasciola hepatica
803
857
2.685
Neisseria meningitidis
789
853
2.696
Human poliovirus
766
780
2.690
Tityus serrulatus
764
775
2.680
Torpedo californica
752
788
2.687
Cryptomeria japonica
719
794
2.680
Mycobacterium bovis
717
733
2.688
Trypanosoma cruzi
691
777
2.704
Andes virus CHI-7913
679
687
2.690
Bovine papillomavirus
672
665
2.692
Human hepatitis
670
696
2.688
Leishmania infantum
659
735
2.688
Human parvovirus
649
691
2.683
Poa pratensis
648
664
2.692
Aspergillus fumigatus
642
709
2.677
Duck hepatitis
587
603
2.688
Olea europaea
571
577
2.692
Porcine reproductive
515
514
2.681
Fagopyrum esculentum
509
497
2.685
Juniperus ashei
505
568
2.672
Mycobacterium leprae
489
542
2.690
Glycine max
477
509
2.685
D. pteronyssinus
455
464
2.680
Plasmodium vivax
453
446
2.690
Chlamydophila pneumoniae
446
462
2.690
Pseudomonas aeruginosa
443
454
2.691
Vibrio cholera
427
426
2.694
Streptococcus sp.
426
425
2.691
Mycobacterium avium
425
415
2.689
Dermatophagoides farinae
410
390
2.693
Human coxsackievirus
406
392
2.694
Equine infectious virus
404
419
2.688
Babesia equi
383
371
2.696
Prunus dulcis
383
379
2.708
Human adenovirus
375
405
2.686
Theileria parva
366
371
2.713
Candida albicans
365
370
2.690
Porcine endogenous
355
351
2.692
Ovis aries
352
350
2.683
Chironomus thummi
347
338
2.691
Sus scrofa
343
362
2.686
Bovine leukemia virus
333
329
2.676
Ricinus communis
329
314
2.692
Androctonus australis
322
357
2.685
Renibacterium salmoninarum
319
350
2.690
Orientia tsutsugamushi
309
372
2.705
Anacardium occidentale
293
306
2.693
Conus geographus
289
295
2.660
Host organism (ho)
*
Homo sapiens
257293
91093
2.6856
Mus musculus
107867
51466
2.6873
Oryctolagus cuniculus
65053
31433
2.6900
Bos taurus
15333
2072
2.6909
Rattus norvegicus
9450
3562
2.6876
Aotus sp.
9044
3933
2.6879
Sus scrofa
7725
3464
2.6873
Gallus gallus
7507
997
2.6790
Canis lupus
6604
3334
2.6906
Macaca mulatta
5261
2569
2.6993
Ovis aries
3953
1653
2.6836
Equus caballus
3943
2099
2.6842
Cavia porcellus
3458
1688
2.6833
Capra hircus
2182
1127
2.6830
Aotus nancymaae
1659
852
2.6837
Pan troglodytes
1614
732
2.6757
Marmota monax
1100
509
2.7011
Felis catus
901
279
2.6838
Myodes glareolus
814
388
2.6863
Anas platyrhynchos
688
342
2.6880
Homo sapiens (human)
508
270
2.6851
Trichosurus vulpecula
456
126
2.6921
Mesocricetus auratus
438
104
2.6909
Macaca cyclopis
382
193
2.6871
O. tshawytscha
333
159
2.6929
Macaca fuscata
188
100
2.6667
Cricetulus migratorius
171
142
2.7008
Camelus dromedarius
171
89
2.6886
Dicentrarchus labrax
121
55
2.6759
Macaca fascicularis
96
52
2.6793
Saimiri sciureus
92
44
2.6900
Canis familiaris
77
42
2.6850
Rattus rattus
72
31
2.6760
Callithrix pygmaea
67
30
2.6920
Chinchilla lanigera
41
24
2.6729
Aotus lemurinus
30
19
2.6860
Papio cynocephalus
27
13
2.7267
Aotus griseimembra
26
12
2.7000
Mustela vison
18
10
2.7000
Chlorocebus aethiops
15
10
2.6875
Bos indicus
13
4
2.6925
Oncorhynchus mykiss
10
4
2.6700
M. macquariensis
9
6
2.6600
Cricetulus griseus
8
4
2.6900
Aotus trivirgatus
7
4
2.7000
Process type (pt)
*
AID
111197
108536
2.6876
OOID
32419
32617
2.6868
OAID
19210
18954
2.6801
OOA
15863
16303
2.6902
NI
13430
15206
2.6845
EWEIR
4818
4864
2.6843
EEE
3113
3546
2.6906
OOD
2806
2799
2.6887
AICD
1077
1095
2.6812
EWED
696
686
2.6879
DEWED
280
337
2.6804
TT
260
215
2.6806
OOC
153
137
2.6800
Technique (tq)
*
ELISA
133458
135109
2.6871
WI
33627
33292
2.6887
ACAbB
7780
9068
2.6862
PhDIP
7450
4496
2.6771
RIA
5241
5218
2.6858
IFAIH
4454
4581
2.6879
NIAA
4222
4316
2.6892
FIA
2255
2276
2.6897
PAC
1312
1219
2.6837
IP
1127
1089
2.6886
SPR
758
639
2.6860
FACS
608
647
2.6907
Other
502
495
2.6813
SAC
484
393
2.6878
ELISPOT
396
412
2.6979
RDAT
366
323
2.6859
EDAT
284
330
2.6800
XRC
231
227
2.6880
MS
209
179
2.6849
PFF
171
153
2.6820
AbDPO
162
295
2.6968
CdC
146
205
2.6895
IAbBA
144
183
2.6940
IOT
124
106
2.6835
HAGGI
115
122
2.6834
IgMHR
89
90
2.6929
EAAA
84
139
2.6922
HS
82
67
2.6791
AbdCC
73
118
2.6897
AGG
50
60
2.6980
CM
50
57
2.6863
The ∗indicates that quantities like ∗ is the average value of the mean electronegativity () for all the peptides in IEDB that are epitopes for the same boundary condition.