Research Article
Comparative (Computational) Analysis of the DNA Methylation Status of Trinucleotide Repeat Expansion Diseases
Table 2
Table of unique patterns in each region.
(a) Patterns unique to VM |
| Pattern | Sum (VM) | Sum (AM) | Sum (NM) |
| gaagcttc | 0.006803 | 0 | 0 | gagctgac | 0.010544 | 0 | 0 | gtagctac | 0.014286 | 0 | 0 |
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(b) Top 10 proportionally most frequently occurring patterns unique to AM |
| Pattern | Sum (VM) | Sum (AM) | Sum (NM) |
| taaagctt | 0 | 0.043757 | 0 | tctagcta | 0 | 0.043119 | 0 | taagctta | 0 | 0.038785 | 0 | gaagctaa | 0 | 0.034818 | 0 | taagctat | 0 | 0.030483 | 0 | tagcttat | 0 | 0.028634 | 0 | atagctag | 0 | 0.026786 | 0 | agctatac | 0 | 0.024938 | 0 | aagcttag | 0 | 0.024938 | 0 | tatagcta | 0 | 0.024938 | 0 |
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(c) The 8 proportionally most frequently occurring patterns which are more prevalent in NM than in VM and AM |
| Pattern | Sum (VM) | Sum (AM) | Sum (NM) |
| agctatct | 0 | 0.001848 | 0.004348 | agatagct | 0 | 0.001848 | 0.004348 | aagctgat | 0 | 0.003697 | 0.008696 | atcagctt | 0 | 0.003697 | 0.008696 | agctatcg | 0 | 0.005545 | 0.008696 | cgatagct | 0 | 0.005545 | 0.008696 | atcgagct | 0 | 0.005545 | 0.008696 | agctcgat | 0 | 0.005545 | 0.008696 |
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