Expression Analysis of Sugarcane Aquaporin Genes under Water Deficit
Table 3
The 30 HT-SuperSAGE unitags most expressed and annotated as aquaporins from sugarcane libraries with contrasting genotypes under stress (24 h of continuous dehydration) or normal daily irrigation.
Unitag id
Aquaporin
Tags per million (tpm)
SD24T
SDTC
SD24S
SDSC
SD173282
SoTIP2-2
1,096
3,784
1,643
1,816
SD231437
SoPIP1-3/PIP1-4
819
1,551
1,140
990
SD87583
SoPIP1-3/PIP1-4
964
956
1,186
520
SD119746
SoTIP2-3
1,162
1,041
771
530
SD173276
SoTIP2-2
564
1,879
496
0
SD182865
SoTIP2-2
535
876
501
674
SD87593
SoPIP1-3 /PIP1-4
579
601
750
377
SD80613
SoTIP1-1
318
234
775
571
SD80612
SoTIP1-1
437
393
423
453
SD250744
SoPIP2-1
321
577
265
508
SD19004
HvTIP1-1
422
395
411
210
SD176669
SoPIP2-6
275
591
310
183
SD243880
SoPIP2-1
176
326
334
496
SD28080
SoPIP2-4
406
329
224
312
SD176663
SoPIP2-6
135
340
227
136
SD241279
SoPIP1-5
151
184
257
107
SD84960
SsTIP1-1
202
216
29
136
SD243849
SoPIP2-1
108
123
113
40
SD54852
SoPIP2-1
107
143
22
52
SD96918
SoSIP1-2
106
66
96
49
SD96922
SoSIP1-2
89
43
114
49
SD202395
PvNIP1-1
39
53
40
98
SD243867
SoPIP2-1
37
42
79
43
SD87586
SoPIP1-3/PIP1-4
31
54
28
55
SD250859
SoPIP2-1
39
96
0
32
SD198883
SoPIP2-5
39
27
30
37
SD21811
SoSIP1-1
26
16
26
26
SD84958
SsTIP1-1
29
15
9
17
SD217703
SoNIP3-1
29
15
13
13
SD36243
HvTIP2-2
31
9
12
9
Isoforms are preceded by the abbreviated species name (Hv: Hordeum vulgare; Pv: Panicum virgatum; So: Saccharum officinarum; Ss: Saccharum spp). SuperSAGE libraries: SD24T (bulk of tolerant genotypes under stress; SD24S (bulk of sensitive genotypes under stress); SDTC (control bulk of tolerant genotypes); SDSC (control bulk of sensitive genotypes).
