About this Journal Submit a Manuscript Table of Contents
Journal of Nanotechnology
Volume 2012 (2012), Article ID 453953, 5 pages
http://dx.doi.org/10.1155/2012/453953
Research Article

FOLDNA, a Web Server for Self-Assembled DNA Nanostructure Autoscaffolds and Autostaples

Bio-X Institutes, Shanghai Jiao Tong University, 1954 Huashan Road, Shanghai 200240, China

Received 3 April 2012; Revised 23 July 2012; Accepted 10 August 2012

Academic Editor: Menka Jain

Copyright © 2012 Chensheng Zhou et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. N. C. Seeman, “Nucleic acid junctions and lattices,” Journal of Theoretical Biology, vol. 99, no. 2, pp. 237–247, 1982. View at Scopus
  2. P. W. K. Rothemund, “Folding DNA to create nanoscale shapes and patterns,” Nature, vol. 440, no. 7082, pp. 297–302, 2006. View at Publisher · View at Google Scholar · View at Scopus
  3. R. Chhabra, J. Sharma, Y. Liu, S. Rinker, and H. Yan, “DNA self-assembly for nanomedicine,” Advanced Drug Delivery Reviews, vol. 62, no. 6, pp. 617–625, 2010. View at Publisher · View at Google Scholar · View at Scopus
  4. L. Qian, Y. Wang, Z. Zhang et al., “Analogic China map constructed by DNA,” Chinese Science Bulletin, vol. 51, no. 24, pp. 2973–2976, 2006. View at Publisher · View at Google Scholar · View at Scopus
  5. Y. He, Y. Tian, A. E. Ribbe, and C. Mao, “Antibody nanoarrays with a pitch of ~20 nanometers,” Journal of the American Chemical Society, vol. 128, no. 39, pp. 12664–12665, 2006. View at Publisher · View at Google Scholar · View at Scopus
  6. Y. Ke, S. Lindsay, Y. Chang, Y. Liu, and H. Yan, “Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays,” Science, vol. 319, no. 5860, pp. 180–183, 2008. View at Publisher · View at Google Scholar · View at Scopus
  7. Z. Zhang, Y. Wang, C. Fan et al., “Asymmetric DNA origami for spatially addressable and index-free solution-phase DNA chips,” Advanced Materials, vol. 22, no. 24, pp. 2672–2675, 2010. View at Publisher · View at Google Scholar · View at Scopus
  8. Z. Zhang, D. Zeng, H. Ma et al., “A DNA-origami chip platform for label-free SNP genotyping using toehold-mediated strand displacement,” Small, vol. 6, no. 17, pp. 1854–1858, 2010. View at Publisher · View at Google Scholar · View at Scopus
  9. S. M. Douglas, H. Dietz, T. Liedl, B. Högberg, F. Graf, and W. M. Shih, “Self-assembly of DNA into nanoscale three-dimensional shapes,” Nature, vol. 459, no. 7245, pp. 414–418, 2009. View at Publisher · View at Google Scholar · View at Scopus
  10. S. M. Douglas, A. H. Marblestone, S. Teerapittayanon, A. Vazquez, G. M. Church, and W. M. Shih, “Rapid prototyping of 3D DNA-origami shapes with caDNAno,” Nucleic Acids Research, vol. 37, no. 15, pp. 5001–5006, 2009. View at Publisher · View at Google Scholar · View at Scopus
  11. NanoEngineer-1,” Nanorex Inc., Bloomfield Hills, Mich, USA, http://www.nanorex.com.
  12. J. Zhu, B. Wei, Y. Yuan, and Y. Mi, “UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation,” Nucleic Acids Research, vol. 37, no. 7, pp. 2164–2175, 2009. View at Publisher · View at Google Scholar · View at Scopus
  13. C. S. Andersen, H. Yan, and K. V. Gothelf, “Bridging one helical turn in double-stranded DNA by templated dimerization of molecular rods,” Angewandte Chemie, vol. 47, no. 30, pp. 5569–5572, 2008. View at Publisher · View at Google Scholar · View at Scopus
  14. J. J. Birac, W. B. Sherman, J. Kopatsch, P. E. Constantinou, and N. C. Seeman, “Architecture with GIDEON, a program for design in structural DNA nanotechnology,” Journal of Molecular Graphics and Modelling, vol. 25, no. 4, pp. 470–480, 2006. View at Publisher · View at Google Scholar · View at Scopus
  15. E. S. Andersen, M. Dong, M. M. Nielsen et al., “DNA origami design of dolphin-shaped structures with flexible tails,” ACS Nano, vol. 2, no. 6, pp. 1213–1218, 2008. View at Publisher · View at Google Scholar · View at Scopus
  16. J. Li, H. Pei, B. Zhu, et al., “Self-assembled multivalent DNA nanostructures for noninvasive intracellular delivery of immunostimulatory CpG oligonucleotides,” ACS Nano, vol. 5, no. 11, pp. 8783–8789, 2011.
  17. E. S. Andersen, M. Dong, M. M. Nielsen et al., “Self-assembly of a nanoscale DNA box with a controllable lid,” Nature, vol. 459, no. 7243, pp. 73–76, 2009. View at Publisher · View at Google Scholar · View at Scopus