Design and Construction of a Single-Tube, LATE-PCR, Multiplex Endpoint Assay with Lights-On/Lights-Off Probes for the Detection of Pathogens Associated with Sepsis

Table 4

Bacterial and fungal genomic DNA targets for 16S sepsis multiplex assay.

Target	Abbreviation	Accession ID	ATCC Acquisition
Bacteria
A. baumannii	AB	NC_010400	17978D-5
E. aerogenes	EA	HM480361	15038D-5
E. cloacae	EC	GU979185.1	13047D-5
E. faecalis	EFS	NC_004668	700802D-5
E. faecium	EFM	AJ301830	BAA-472D-5
K. pneumoniae	KP	NC_011283	BAA-1706D-5
K. oxytoca	KO	NR_041749.1	Received from UC Davis
P. aeruginosa	PA	NC_009656	17933D
S. aureus	SA	NC_002745	Barry Kreiswirth PHRI
S. epidermidis	SE	NC_002976	12228D-5
S. haemolyticus	SH	X66100	29970D-5
S. saprophyticus	SS	EF522127.1	Received from UC Davis
S. hominis	SHM	X66101	Received from UC Davis
L. lactis (Control)	CTL	NC_008527	Received from Smiths
Fungi
C. albicans	CA	AF153846	14053D-5
C. parapsilosis	CP	GQ302972	Received from UC Davis
C. tropicalis	CT	AY942643	Received from UC Davis
C. glabratta	CG	AY942647	Received from UC Davis