Research Article
A Two-Stage Penalized Logistic Regression Approach to Case-Control Genome-Wide Association Studies
Table 2
The simulated average PDR and FDR under Model 1: multiplicative effects both within and between loci.
| | | | PDR | FDR | TPLR | MT | TPLR | MT |
| (800,1000) | 0.8 | 0.1 | 0.610 | 0.780 | 0.358 | 0.996 | 0.9 | 0.1 | 0.850 | 0.900 | 0.320 | 0.998 | 1.0 | 0.1 | 0.960 | 1.000 | 0.219 | 0.999 |
| (800,5000) | 0.8 | 0.1 | 0.470 | 0.660 | 0.405 | 0.999 | 0.9 | 0.1 | 0.750 | 0.870 | 0.380 | 0.999 | 1.0 | 0.1 | 0.890 | 0.930 | 0.233 | 0.999 |
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