Research Article
A Two-Stage Penalized Logistic Regression Approach to Case-Control Genome-Wide Association Studies
Table 4
The simulated average PDR and FDR under Model 3: two-locus threshold interaction effects.
| | | | PDR | FDR | TPLR | MT | TPLR | MT |
| (800,1000) | 0.8 | 0.1 | 0.530 | 0.455 | 0.086 | 0.884 | 0.9 | 0.1 | 0.730 | 0.695 | 0.052 | 0.965 | 1.0 | 0.1 | 0.810 | 0.840 | 0.047 | 0.970 |
| (800,5000) | 0.8 | 0.1 | 0.350 | 0.270 | 0.028 | 0.800 | 0.9 | 0.1 | 0.620 | 0.490 | 0.101 | 0.999 | 1.0 | 0.1 | 0.712 | 0.657 | 0.060 | 0.982 |
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