A Two-Stage Penalized Logistic Regression Approach to Case-Control Genome-Wide Association Studies

Table 5

The simulated average PDR and FDR under Model 4: significant interaction effect but zero marginal effects.

(𝑛,𝑃)	𝜉12	𝑞	PDR		FDR
			TPLR	MT	TPLR	MT
(800,1000)	1.9	0.1	0.828	0.702	0.012	≥0.550
	2.0	0.1	0.945	0.860	0.026	≥0.641
	2.1	0.1	0.965	0.915	0.015	≥0.915
(800,5000)	1.9	0.1	0.555	0.460	0.009	≥0.406
	2.0	0.1	0.730	0.710	0.014	≥0.427
	2.1	0.1	0.885	0.795	0.006	≥0.562