Research Article
Three-Dimensional Molecular Modeling of a Diverse Range of SC Clan Serine Proteases
Table 6
Structural parameters of experimentally determined and predicted 3D structures of SC serine proteases.
| ID | Taxa | Species | Superposed of AA % | RMSD Å | Distances between the catalytic triad Å | (D-H) | (H-S) | (S-D) |
| 1AZW | Bacteria | X. campestris | 10.20 | 1.330 | 4.4 | 7.8 | 10.5 | 2BKL | Bacteria | M. xanthus | 27.60 | 0.726 | 4.6 | 8.3 | 10.6 | 1A88 | Bacteria | S. lividans | 12.30 | 1.080 | 4.6 | 7.9 | 10.6 | 1VE7 | Archaea | A. pernix | 15.76 | 1.083 | 4.7 | 8.4 | 10.4 | 1MU0 | Archaea | T. acidophilum | 17.00 | 1.013 | 4.3 | 7.8 | 10.1 | 1AC5 | Fungi | S. cerevisiae | 17.86 | 1.441 | 4.8 | 7.7 | 10.8 | 1WPX | Fungi | S. cerevisiae | 12.30 | 1.168 | 4.6 | 7.4 | 10.4 | 1N1M | Animalia | H. sapiens | 16.29 | 1.163 | 4.8 | 7.7 | 10.7 | 1QFS | Animalia | S. scrofa | 100 | 0.000 | 4.6 | 8.1 | 10.5 | 1ORW | Animalia | S. scrofa | 18.29 | 1.092 | 4.8 | 7.7 | 10.7 | 2BUC | Animalia | S. scrofa | 17.15 | 1.108 | 4.8 | 7.7 | 10.7 |
| Mean ± SD of the C distances between the triad residues | 4.6 ± 0.03 | 7.9 ± 0.06 | 10.5 ± 0.04 |
| PM0078228 | Plantae | A. thaliana | 16.7 | 1.021 | 4.5 | 8.2 | 11.2 | PM0078229 | Protozoa | P. falciparum | 69.3 | 0.686 | 4.6 | 8.1 | 10.5 |
| Mean ± SD of the C distances between the triad residues | 4.6 ± 0.01 | 8.2 ± 0.01 | 10.9 ± 0.25 |
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