Estimating Network Kinetics of the MAPK/ERK Pathway Using Biochemical Data

Table 10

List of proteins used in inference of the reaction rates of Model 3.

Independent	Ras.GDP, Ras.GTP, Raf, Raf.I, Raf.I𝑚, Raf.A𝑚, MEK, MEK.p2,
	MEK𝐹, ERK, ERK.p2, ERK.p2-TF.p2, ERK.p2-RSK.A, Grb2,
	Shc, SOS, Grb2-SOS, Grb2-SOS𝑚, c-Fos, c-Fos.RNA, c-Fos.p,
	MKP, MKP.RNA
Dependent	Raf.I-Ras.GTP𝑚, MEK𝑆, ERK.p2-RSK.A-TF.p2, Shc-Grb2-SOS𝑚,
	Grb2𝑚, Shc-Grb2𝑚, c-Fos.DNA, MKP.DNA, EGFR, TF, GAP,
	PP2A, PAK, PP5, RSK