Estimating Network Kinetics of the MAPK/ERK Pathway Using Biochemical Data

Table 6

List of proteins used in inference of the reaction rates of Model 1.

Independent	Ras.GDP, Ras.GTP, Raf, Raf.I, Raf.A𝑚, MEK, MEK𝐹, MEK.p2
	ERK, ERK.p2, ERK.p2-TF.p2, ERK.p2-RSK.A, Grb2, Shc, SOS,
	Grb2-SOS, Grb2-SOS𝑚, c-Fos, c-Fos.RNA, MKP.
Dependent	Raf.I𝑚, Raf.I-Ras.GTP𝑚, MEK𝑆, ERK.p2-RSK.A-TF.p2, Grb2𝑚,
	Shc-Grb2-SOS𝑚, Shc-Grb2𝑚, c-Fos.p, c-Fos.DNA, MKP.DNA,
	MKP.RNA, EGFR, TF, GAP, PP2A, PAK, PP5, RSK.