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| Disease | Genetic defects | iPSC derived cell types | Disease phenocopied in iPSCs or differentiated cells | Drug or functional tests |
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| Rett syndrome | Mutation in MECP2 | Neurons; glutamatergic neurons | Yes | Yes |
| Mutation in CDKL5 | Neurons | NA | No |
| Fragile X syndrome | CGG triplet repeat expansion resulting in the silencing of FMR1 | Neurons and glia | Yes | No |
| Down syndrome | Trisomy 21 | Cortical neurons | Yes | Yes |
| Angelman syndrome | Lack of UBE3A expression due to genomic imprinting | Neurons | Yes | Yes |
| Prader-Willi syndrome | Lack of expression of genes in paternal chromosome region 15q11-q13 due to genomic imprinting | Tissues of the three germ layers, including neurons | NA | No |
| Timothy syndrome | Mutation in the L-type calcium channel 1.2 | Neurons | Yes | Yes |
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